bdmm | Computational Framework to Quantify Population Structure

 by   denisekuehnert Java Version: v1.0 License: GPL-3.0

kandi X-RAY | bdmm Summary

kandi X-RAY | bdmm Summary

bdmm is a Java library. bdmm has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However bdmm build file is not available. You can download it from GitHub.

The BDMM project provides a [BEAST 2] package for performing phylodynamic inference under a structured birth-death model. Note that this repository contains only the source code for the package and will therefore be of interest only to programmers. A binary release for this package will be provided soon.
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            kandi-support Support

              bdmm has a low active ecosystem.
              It has 3 star(s) with 4 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 6 have been closed. On average issues are closed in 1 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of bdmm is v1.0

            kandi-Quality Quality

              bdmm has no bugs reported.

            kandi-Security Security

              bdmm has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              bdmm is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              bdmm releases are available to install and integrate.
              bdmm has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed bdmm and discovered the below as its top functions. This is intended to give you an instant insight into bdmm implemented functionality, and help decide if they suit your requirements.
            • Initialize this editor
            • Get the rate of a rate matrix
            • Load the model from bdMM
            • Save the RDB model
            • Test 2
            • Returns a string representation of this number
            • Converts a small number into a ScientificNumber
            • Scaled ODE system
            • Computes the derivatives of the derivative
            • Creates a custom connector from the given document
            • Computes the derivatives of t
            • Updates the new node
            • Checks if a custom connector is a custom connector
            • Obtains the offset of the rate matrix
            • Populate the change information from the XML
            • Initialize the logger
            • Returns a proposal proposal
            • Assigns this state to other
            • Initialize the quantiles
            • Calculates the log - likelihood of the tree
            • Main method for testing only
            • Calculates the log likelihood of the given tree
            • Test program
            • Command entry point
            • Builds a tree from a population history
            • Initialize and validate the inputs
            Get all kandi verified functions for this library.

            bdmm Key Features

            No Key Features are available at this moment for bdmm.

            bdmm Examples and Code Snippets

            No Code Snippets are available at this moment for bdmm.

            Community Discussions

            No Community Discussions are available at this moment for bdmm.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install bdmm

            You can download it from GitHub.
            You can use bdmm like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the bdmm component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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