kandi X-RAY | SnpSift Summary
kandi X-RAY | SnpSift Summary
SnpSift
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Top functions reviewed by kandi - BETA
- Computes the covariance statistic .
- Factory method for SnpSift cmd .
- Convert VCF file to TPED format .
- Print the counts for a VCF entry .
- Parses the VCF entry .
- Guess the data types for the specified file .
- Split the VCF file .
- Read phastConso file for a given geneotype .
- Load the intervals from the VCF file .
- Calculates the HWE for a VCF entry .
SnpSift Key Features
SnpSift Examples and Code Snippets
Community Discussions
Trending Discussions on SnpSift
QUESTION
I am trying to download some files with snakemake. The files (http://snpeff.sourceforge.net/SnpSift.html#dbNSFP) I would like to download are on a google site/drive and my usual wget approach does not work. I found a bash function that does the job (https://www.zachpfeffer.com/single-post/wget-a-Google-Drive-file):
...ANSWER
Answered 2020-Feb-08 at 18:33You would want to use raw string literal so that snakemake doesn't escape special characters, such as backslash in sed
command. For example (notice r
in front of shell command):
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install SnpSift
You can use SnpSift like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the SnpSift component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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