split-files | Split files recursively for a given separator | Plugin library

by arpit9616 JavaScript Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(4)Vulnerabilities Install Support

kandi X-RAY | split-files Summary

split-files is a JavaScript library typically used in Plugin applications. split-files has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Split files recursively for a given separator

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Support

split-files has a low active ecosystem.

It has 1 star(s) with 0 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

split-files has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of split-files is current.

Quality

split-files has 0 bugs and 0 code smells.

Security

split-files has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

split-files code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

split-files does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

split-files releases are not available. You will need to build from source code and install.

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split-files Key Features

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split-files Examples and Code Snippets

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Community Discussions

Trending Discussions on split-files

R and sra toolkit - odd system() behavior

How to implement splitting of files in snakemake when number of files is known

Pyspark dataframe split alphabetically and write to S3

Bash loop using two input files as lists

QUESTION

R and sra toolkit - odd system() behavior

Asked 2021-Sep-29 at 13:06

In order to extract some fastq data from NCBI's sequence read archive I've downloaded and installed the sra toolkit for Windows. In order to test if it is setup correctly, I opened cmd, navigated to the directory and typed in the command fasterq-dump --split-files SRR7647019. It downloads the file SRR7647019.sra as expected and splits it into fastq files.

Then I've tried the same command in RStudio, wrapping the system() command around it: system(fasterq-dump --split-files SRR7647019). However, R always returns

An error occured: unrecognized tool FASTER~2.EXE If this continues to happen, please contact the SRA Toolkit at https://trace.ncbi.nlm.nih.gov/Traces/sra/

as well as the number 75 (probably an error code).

Any idea why I'm not able to run fasterq-dump.exe from R? How could it be solved?

Thanks a lot for suggestions in advance!

...

ANSWER

Answered 2021-Sep-29 at 13:06

Sometimes it helps to call the terminal shell explicitly to bypass the environmental variables which might get overwritten by RStudio:

Source https://stackoverflow.com/questions/69375563

QUESTION

How to implement splitting of files in snakemake when number of files is known

Asked 2021-Aug-13 at 20:23

Context

rule A uses the split command in a shell directive. The number of files generated by rule A depends on a user specified value from the config and is thus known.

In this question there is a difference because the number of output files is unknown, but there is a reference to the dynamic() keyword. Apparently this has been replaced by the use of checkpoint. Is this really the correct way to go in this scenario? There is also something like scattergatter but the example is not clear to me.

Code ...

ANSWER

Answered 2021-Aug-13 at 20:23

Since the number of chunks is known beforehand, you can set the number of output files in rule A from the chunks parameter using an array:

Source https://stackoverflow.com/questions/68774967

QUESTION

Pyspark dataframe split alphabetically and write to S3

Asked 2021-Jul-01 at 16:50

I am trying to split a huge XML file into small XML files using pyspark. I need the data to be written into buckets alphabetically.

Suppose if the name starts with a then it would be written to an s3 bucket s3://bucket_name/a. If there is no name that starts with b it should still create a folder with name b in the same bucket, that is s3://bucket_name/b

So far the code I have is

...

ANSWER

Answered 2021-Jun-30 at 20:05

To reduce the time use df.persist() before the for loop as suggested by @Steven

For the small files issue you can use coalesce but this is expensive operation.

Source https://stackoverflow.com/questions/68193420

QUESTION

Bash loop using two input files as lists

Asked 2021-Jan-29 at 02:01

I am trying to optimize a for loop to download files from a website based in a file with SPECIES names and their corresponding numbers of ACCESSION. I want the loop to work first with the first species and the first accession number of the each file and so on... I tried the basic rule but it is not working.

...

ANSWER

Answered 2021-Jan-29 at 02:01

Do you have two loops and just one done and do you have that working?
And as @Mheni said it seems that you aren't using the loop's variables
Here an example of a simple script with two loops one inside the other

Source https://stackoverflow.com/questions/65942404

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install split-files

You can download it from GitHub.

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