ega-download-client | A Python-based EGA download client | Download Utils library

 by   EGA-archive Python Version: v5.0.2 License: Apache-2.0

kandi X-RAY | ega-download-client Summary

kandi X-RAY | ega-download-client Summary

ega-download-client is a Python library typically used in Telecommunications, Media, Media, Entertainment, Utilities, Download Utils applications. ega-download-client has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. However ega-download-client has 1 bugs. You can install using 'pip install ega-download-client' or download it from GitHub, PyPI.

The pyEGA3 download client is a python-based tool for viewing and downloading files from authorized EGA datasets. pyEGA3 uses the EGA Data API and has several key features:.
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            kandi-support Support

              ega-download-client has a low active ecosystem.
              It has 69 star(s) with 45 fork(s). There are 11 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 14 open issues and 100 have been closed. On average issues are closed in 113 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of ega-download-client is v5.0.2

            kandi-Quality Quality

              OutlinedDot
              ega-download-client has 1 bugs (1 blocker, 0 critical, 0 major, 0 minor) and 33 code smells.

            kandi-Security Security

              ega-download-client has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              ega-download-client code analysis shows 0 unresolved vulnerabilities.
              There are 17 security hotspots that need review.

            kandi-License License

              ega-download-client is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              ega-download-client releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              ega-download-client saves you 524 person hours of effort in developing the same functionality from scratch.
              It has 1243 lines of code, 89 functions and 5 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed ega-download-client and discovered the below as its top functions. This is intended to give you an instant insight into ega-download-client implemented functionality, and help decide if they suit your requirements.
            • Execute a subcommand
            • Delete a temporary folder
            • Fetch data
            • Download a file from the archive
            • Returns the checksum of the file
            • Load the metadata for this file
            • Create a DataFile from the given metadata
            • Set metadata from a json response
            • Calculate the md5 of a file
            • Calculate the MD5 hash of a file
            • Combine bin files on disk
            • Copy data from f_source to f_destination
            • Read credentials from a JSON file
            • Prompt user for missing values
            • Get the client IP address
            • The name of the display
            • File name
            • Status of the file
            • Return the size of the file
            Get all kandi verified functions for this library.

            ega-download-client Key Features

            No Key Features are available at this moment for ega-download-client.

            ega-download-client Examples and Code Snippets

            EGA download client: pyEGA3,Usage - Genomic range requests via htsget
            Pythondot img1Lines of Code : 41dot img1License : Permissive (Apache-2.0)
            copy iconCopy
            usage: pyega3 fetch [-h] [--reference-name REFERENCE_NAME]
                                [--reference-md5 REFERENCE_MD5] [--start START]
                                [--end END] [--format {BAM,CRAM}]
                                [--max-retries MAX_RETRIES] [--retry-wait RETRY_W  
            EGA download client: pyEGA3,Usage - File download
            Pythondot img2Lines of Code : 24dot img2License : Permissive (Apache-2.0)
            copy iconCopy
            usage: pyega3.py [-h] [-d] [-cf CONFIG_FILE] [-sf SERVER_FILE] [-c CONNECTIONS] [-t] [-ms MAX_SLICE_SIZE] {datasets,files,fetch} ...
            
            Download from EMBL EBI's EGA (European Genome-phenome Archive)
            
            positional arguments:
              {datasets,files,fetch}
                   
            EGA download client: pyEGA3,Usage - File download,Using pyEGA3 for file download
            Pythondot img3Lines of Code : 7dot img3License : Permissive (Apache-2.0)
            copy iconCopy
            pyega3 -cf  datasets
            
            pyega3 -cf  files EGAD
            
            pyega3 -cf  fetch EGAD --output-dir 
            
            pyega3 -cf  fetch EGAF --output-dir 
            
            nohup pyega3 -cf  files EGAD 
            
            pyega3 -c 5 -cf  fetch EGAD --output-dir 
              

            Community Discussions

            QUESTION

            Getting the error "Nested CSS was detected, but CSS nesting has not been configured correctly" in React app?
            Asked 2022-Mar-23 at 09:04

            I've been upgrading my CRA project to TailwindCSS 3, but now CSS nesting no longer works. Upon starting the server, the console spits out:

            ...

            ANSWER

            Answered 2022-Feb-03 at 18:38

            This is mostly just bad news.

            Create React App's Tailwind support means that they will detect tailwind.config.js in the project and add tailwindcss to their existing postcss configuration. Source in CRA

            The guide that Tailwind offers on their site creates a dummy postcss.config.js - Making changes in this file does not change the actual postcss configuration. (misleading if anything)

            This is a known issue currently - Github discussion on Tailwind support PR between Adam Wathan (Tailwind founder) and Ian Sutherland (CRA maintainer). But it does not seem like there is an intention to be fixed soon.

            If you want to use nesting (or any PostCSS plugin really) is to eject from CRA using:

            Source https://stackoverflow.com/questions/70665302

            QUESTION

            Apollo Client "Named export 'remove' not found"
            Asked 2022-Mar-12 at 09:45

            I'm attempting to create an apollo client plugin for a Nuxt 3 application. It's currently throwing an error regarding a package called ts-invariant:

            ...

            ANSWER

            Answered 2022-Jan-07 at 01:52

            Solved by including @apollo/client and ts-invariant/process into the nuxt build transpile like so:

            Source https://stackoverflow.com/questions/70615613

            QUESTION

            Nuxt3: how to use tailwindcss
            Asked 2022-Mar-02 at 14:50

            Very first try on Nuxt3 via Nuxt3 Starter

            I wonder how can I use tailwindcss in Nuxt3 Starter manually.

            (Not via @nuxtjs/tailwindcss , because it's for Nuxt2, and not work with Nuxt3.)

            I created a blank Nuxt3 project by

            ...

            ANSWER

            Answered 2021-Oct-04 at 04:17

            Maybe your problem is because you need a tailwindcss.config.js.

            For this, simply type in the console:

            Source https://stackoverflow.com/questions/69114800

            QUESTION

            Laravel Mix URL Processing error with css-loader
            Asked 2022-Feb-22 at 10:55

            In a fresh Laravel 9 installation, the URL processing from Laravel Mix does not work anymore.

            npm outputs the following:

            ...

            ANSWER

            Answered 2022-Feb-22 at 10:55

            Actually moving the css imports into resources/js/app.js solves this problem. However, this results in the imported css to be included in the public/js/app.js, not the public/css/app.css.

            Source https://stackoverflow.com/questions/71163131

            QUESTION

            How to get 2D scene coordinates of a 3D object in JavaFX
            Asked 2022-Feb-02 at 12:28

            I'm trying the create a 3D subscene with objects being labelled using Label objects in a 2D overlay. I've seen similar questions to mine on this subject, and they all point to using the Node.localToScene method on the node to be labelled in the 3D space. But this doesn't seem to work for my case. I've taken example code from the FXyz FloatingLabels example here:

            FloatingLabels.java

            The Label objects need to have their positions updated as the 3D scene in modified, which I've done but when I print out the coordinates returned by the Node.localToScene method, they're much too large to be within the application scene, and so the labels are never visible in the scene. I've written an example program that illustrates the issue, set up very similarly to the FXyz sample code but I've created an extra SubScene object to hold the 2D and 3D SubScene objects in order to plant them into a larger application window with slider controls. The 3D scene uses a perspective camera and shows a large sphere with coloured spheres along the x/y/z axes, and some extra little nubs on the surface for reference:

            ...

            ANSWER

            Answered 2022-Feb-02 at 12:28

            If you follow what has been done in the link you have posted you'll make it work.

            For starters, there is one subScene, not two.

            So I've removed these lines:

            Source https://stackoverflow.com/questions/70951152

            QUESTION

            Basic angular app fails to run, Error module build failed : cannot find module ../@angular-devkit/src/babel/X
            Asked 2022-Feb-01 at 12:16

            I am new to angular and was following the documentation to build a basic app.

            Node - v14.7.3
            npm - 7.22.0
            Angular CLI: 12.2.4
            OS: win32 x64
            @angular-devkit/architect 0.1202.4
            @angular-devkit/build-angular 12.2.4
            @angular-devkit/core 12.2.4
            @angular-devkit/schematics 12.2.4
            @schematics/angular 12.2.4
            rxjs 6.6.7
            typescript 4.3.5

            So far all I have done is

            npm install @angular/cli

            followed by ng new firstApp

            and ng serve

            Following is the error that I am receiving,

            ...

            ANSWER

            Answered 2021-Sep-10 at 07:17

            Try to install those modules separately npm install:

            Source https://stackoverflow.com/questions/69070369

            QUESTION

            Why does my tailwind output file not include the utilities and components
            Asked 2022-Jan-21 at 16:43

            I've installed tailwind using npm install tailwindcss I then create my src/style.css file and include

            ...

            ANSWER

            Answered 2021-Dec-25 at 20:47

            You need to add a config js file for the tailwind engine, inside the config file use content attribute to define where is your HTML or JS files, the new engine automatically looks inside these files and compiles only the classes that you used.

            Check this video for more information:https://youtu.be/mSC6GwizOag?t=22

            Source https://stackoverflow.com/questions/70477918

            QUESTION

            How can I compare system_clock::now() to a local time in c++20?
            Asked 2022-Jan-20 at 14:01

            I am testing a library like follows:

            ...

            ANSWER

            Answered 2022-Jan-20 at 14:01

            Here's the equivalent C++20 code to your first version of FromDateTime:

            Source https://stackoverflow.com/questions/70784886

            QUESTION

            Count trailing newlines with POSIX utilities or GNU coreutils or Perl
            Asked 2022-Jan-19 at 22:10

            I'm looking for ways to count the number of trailing newlines from possibly binary data either:

            • read from standard input
            • or already in a shell variable (then of course the "binary" excludes at least 0x0) using POSIX or coreutils utilities or maybe Perl.

            This should work without temporary files or FIFOs.

            When the input is in a shell variable, I already have the following (possibly ugly but) working solution:

            ...

            ANSWER

            Answered 2022-Jan-18 at 13:29

            Using GNU awk for RT and without reading all of the input into memory at once:

            Source https://stackoverflow.com/questions/70615510

            QUESTION

            Create new color scheme for dark-light mode in bootstrap sass
            Asked 2022-Jan-16 at 19:50

            I want to create dark mode for a web site which use bootstrap. I have to add new root class which includes all boostrap colors. Here is my colors.scss:

            ...

            ANSWER

            Answered 2021-Aug-07 at 20:32

            As explained here, there's no way to attach a class to :root. However, you don't need this to achieve what you want.

            Simply make a dark class then you can add that as desired to the html or body tag.

            Make all the needed theme color changes inside .dark{}, and then @import "bootstrap". When .dark doesn't exist on the body, the theme colors will return to Bootstrap defaults.

            Source https://stackoverflow.com/questions/68667437

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ega-download-client

            We recommend that all fresh installations of pyEGA3 be tested. A test account has been created which can be used (-t) to test the following pyEGA3 actions:. The test dataset (EGAD00001003338) is large (almost 1TB), so please be mindful if deciding to test downloading the entire dataset. The test account does not require an EGA username and password because it contains publicaly accessible files from the 1000 Genomes Project. The files in the test dataset can be used for troubleshooting and training purposes.
            Download speed can be optimized using the --connections parameter which will parallelize download at the file level. If the --connections parameter is provided, all files >100Mb will be downloaded using the specified number of parallel connections. Using a very high number of connections will introduce overhead that can slow the download of the file. It is important to note that files are still downloaded sequentially, so using multiple connections does not mean downloading multiple files in parallel. We recommend trying with 30 connections initially and adjusting from there to get maximum throughput.

            Support

            First, please ensure you are using the most recent version of pyEGA3 by following instructions in the "Installation and update" section for updating pyEGA3.
            Find more information at:

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            CLONE
          • HTTPS

            https://github.com/EGA-archive/ega-download-client.git

          • CLI

            gh repo clone EGA-archive/ega-download-client

          • sshUrl

            git@github.com:EGA-archive/ega-download-client.git

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