ega-download-client | A Python-based EGA download client | Download Utils library
kandi X-RAY | ega-download-client Summary
kandi X-RAY | ega-download-client Summary
The pyEGA3 download client is a python-based tool for viewing and downloading files from authorized EGA datasets. pyEGA3 uses the EGA Data API and has several key features:.
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Top functions reviewed by kandi - BETA
- Execute a subcommand
- Delete a temporary folder
- Fetch data
- Download a file from the archive
- Returns the checksum of the file
- Load the metadata for this file
- Create a DataFile from the given metadata
- Set metadata from a json response
- Calculate the md5 of a file
- Calculate the MD5 hash of a file
- Combine bin files on disk
- Copy data from f_source to f_destination
- Read credentials from a JSON file
- Prompt user for missing values
- Get the client IP address
- The name of the display
- File name
- Status of the file
- Return the size of the file
ega-download-client Key Features
ega-download-client Examples and Code Snippets
usage: pyega3 fetch [-h] [--reference-name REFERENCE_NAME]
[--reference-md5 REFERENCE_MD5] [--start START]
[--end END] [--format {BAM,CRAM}]
[--max-retries MAX_RETRIES] [--retry-wait RETRY_W
usage: pyega3.py [-h] [-d] [-cf CONFIG_FILE] [-sf SERVER_FILE] [-c CONNECTIONS] [-t] [-ms MAX_SLICE_SIZE] {datasets,files,fetch} ...
Download from EMBL EBI's EGA (European Genome-phenome Archive)
positional arguments:
{datasets,files,fetch}
pyega3 -cf datasets
pyega3 -cf files EGAD
pyega3 -cf fetch EGAD --output-dir
pyega3 -cf fetch EGAF --output-dir
nohup pyega3 -cf files EGAD
pyega3 -c 5 -cf fetch EGAD --output-dir
Community Discussions
Trending Discussions on Utilities
QUESTION
I've been upgrading my CRA project to TailwindCSS 3, but now CSS nesting no longer works. Upon starting the server, the console spits out:
...ANSWER
Answered 2022-Feb-03 at 18:38This is mostly just bad news.
Create React App's Tailwind support means that they will detect tailwind.config.js
in the project and add tailwindcss
to their existing postcss
configuration. Source in CRA
The guide that Tailwind offers on their site creates a dummy postcss.config.js
- Making changes in this file does not change the actual postcss configuration. (misleading if anything)
This is a known issue currently - Github discussion on Tailwind support PR between Adam Wathan (Tailwind founder) and Ian Sutherland (CRA maintainer). But it does not seem like there is an intention to be fixed soon.
If you want to use nesting (or any PostCSS plugin really) is to eject from CRA using:
QUESTION
I'm attempting to create an apollo client
plugin for a Nuxt 3
application. It's currently throwing an error regarding a package called ts-invariant
:
ANSWER
Answered 2022-Jan-07 at 01:52Solved by including @apollo/client
and ts-invariant/process
into the nuxt build transpile like so:
QUESTION
Very first try on Nuxt3 via Nuxt3 Starter
I wonder how can I use tailwindcss in Nuxt3 Starter manually.
(Not via @nuxtjs/tailwindcss , because it's for Nuxt2, and not work with Nuxt3.)
I created a blank Nuxt3 project by
...ANSWER
Answered 2021-Oct-04 at 04:17Maybe your problem is because you need a tailwindcss.config.js
.
For this, simply type in the console:
QUESTION
In a fresh Laravel 9 installation, the URL processing from Laravel Mix does not work anymore.
npm outputs the following:
...ANSWER
Answered 2022-Feb-22 at 10:55Actually moving the css imports into resources/js/app.js
solves this problem. However, this results in the imported css to be included in the public/js/app.js
, not the public/css/app.css
.
QUESTION
I'm trying the create a 3D subscene with objects being labelled using Label objects in a 2D overlay. I've seen similar questions to mine on this subject, and they all point to using the Node.localToScene method on the node to be labelled in the 3D space. But this doesn't seem to work for my case. I've taken example code from the FXyz FloatingLabels example here:
The Label objects need to have their positions updated as the 3D scene in modified, which I've done but when I print out the coordinates returned by the Node.localToScene method, they're much too large to be within the application scene, and so the labels are never visible in the scene. I've written an example program that illustrates the issue, set up very similarly to the FXyz sample code but I've created an extra SubScene object to hold the 2D and 3D SubScene objects in order to plant them into a larger application window with slider controls. The 3D scene uses a perspective camera and shows a large sphere with coloured spheres along the x/y/z axes, and some extra little nubs on the surface for reference:
...ANSWER
Answered 2022-Feb-02 at 12:28If you follow what has been done in the link you have posted you'll make it work.
For starters, there is one subScene, not two.
So I've removed these lines:
QUESTION
I am new to angular and was following the documentation to build a basic app.
Node - v14.7.3
npm - 7.22.0
Angular CLI: 12.2.4
OS: win32 x64
@angular-devkit/architect 0.1202.4
@angular-devkit/build-angular 12.2.4
@angular-devkit/core 12.2.4
@angular-devkit/schematics 12.2.4
@schematics/angular 12.2.4
rxjs 6.6.7
typescript 4.3.5
So far all I have done is
npm install @angular/cli
followed by ng new firstApp
and ng serve
Following is the error that I am receiving,
...ANSWER
Answered 2021-Sep-10 at 07:17Try to install those modules separately npm install
:
QUESTION
I've installed tailwind using npm install tailwindcss
I then create my src/style.css file and include
ANSWER
Answered 2021-Dec-25 at 20:47You need to add a config js file for the tailwind engine, inside the config file use content
attribute to define where is your HTML or JS files, the new engine automatically looks inside these files and compiles only the classes that you used.
Check this video for more information:https://youtu.be/mSC6GwizOag?t=22
QUESTION
I am testing a library like follows:
...ANSWER
Answered 2022-Jan-20 at 14:01Here's the equivalent C++20 code to your first version of FromDateTime
:
QUESTION
I'm looking for ways to count the number of trailing newlines from possibly binary data either:
- read from standard input
- or already in a shell variable (then of course the "binary" excludes at least 0x0) using POSIX or coreutils utilities or maybe Perl.
This should work without temporary files or FIFOs.
When the input is in a shell variable, I already have the following (possibly ugly but) working solution:
...ANSWER
Answered 2022-Jan-18 at 13:29Using GNU awk for RT
and without reading all of the input into memory at once:
QUESTION
I want to create dark mode for a web site which use bootstrap. I have to add new root class which includes all boostrap colors. Here is my colors.scss:
...ANSWER
Answered 2021-Aug-07 at 20:32As explained here, there's no way to attach a class to :root
. However, you don't need this to achieve what you want.
Simply make a dark
class then you can add that as desired to the html or body tag.
Make all the needed theme color changes inside .dark{}, and then @import "bootstrap". When .dark
doesn't exist on the body, the theme colors will return to Bootstrap defaults.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install ega-download-client
Download speed can be optimized using the --connections parameter which will parallelize download at the file level. If the --connections parameter is provided, all files >100Mb will be downloaded using the specified number of parallel connections. Using a very high number of connections will introduce overhead that can slow the download of the file. It is important to note that files are still downloaded sequentially, so using multiple connections does not mean downloading multiple files in parallel. We recommend trying with 30 connections initially and adjusting from there to get maximum throughput.
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