PyMVPA | MultiVariate Pattern Analysis in Python | Data Visualization library
kandi X-RAY | PyMVPA Summary
kandi X-RAY | PyMVPA Summary
MultiVariate Pattern Analysis in Python
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Top functions reviewed by kandi - BETA
- Main entry point
- Create a fMRI dataset
- Append mapper
- Return a new MDS with the given mapper
- Perform a training step
- Evaluate the pmeasure
- Assign a slicearg
- Get training and test dataset
- Setup package
- Train the model
- Calculate the average area of a dataset
- Find connected components
- Call a single split on a split
- Get the mappings between two surfaces
- Generate a mask based on a set of features
- Maps a surface to a high resolution
- Convert Dataset to GIFTI format
- Map from Vororoii to high resolution
- Returns balanced set of elements
- A simple HRF dataset
- Initialize the model
- Run voxel selection on a given radius
- Plot the topography of the topography
- Wrapper for disc search engine
- Call the model on the given dataset
- Evaluate t test
PyMVPA Key Features
PyMVPA Examples and Code Snippets
Community Discussions
Trending Discussions on PyMVPA
QUESTION
I'm trying to implement self-organising maps in Python using pymvpa2 SOM mapper.
It works just fine, but how do I save the resulting SOM?
h5save didn't work for me and I started wondering, if I can create an empty SOM instance and then attach a saved Kohonen layer to it? However, when I try to feed the Kohonen matrix to an empty mapper I get this error:
ANSWER
Answered 2017-Oct-19 at 11:05You can't access som.K
but if you look into som.py
from package you'll see that the script uses som._K
to modify Kohonen layers.
Use this approach:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install PyMVPA
You can use PyMVPA like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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