loom | A tool for running bioinformatics | BPM library

 by   StanfordBioinformatics Python Version: Current License: AGPL-3.0

kandi X-RAY | loom Summary

kandi X-RAY | loom Summary

loom is a Python library typically used in Automation, BPM, Docker applications. loom has no bugs, it has a Strong Copyleft License and it has low support. However loom has 1 vulnerabilities and it build file is not available. You can install using 'pip install loom' or download it from GitHub, PyPI.

A tool for running bioinformatics workflows locally or in the cloud.
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            kandi-support Support

              loom has a low active ecosystem.
              It has 26 star(s) with 7 fork(s). There are 18 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 61 open issues and 453 have been closed. On average issues are closed in 111 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of loom is current.

            kandi-Quality Quality

              loom has no bugs reported.

            kandi-Security Security

              loom has 1 vulnerability issues reported (0 critical, 1 high, 0 medium, 0 low).

            kandi-License License

              loom is licensed under the AGPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              loom releases are not available. You will need to build from source code and install.
              Deployable package is available in PyPI.
              loom has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed loom and discovered the below as its top functions. This is intended to give you an instant insight into loom implemented functionality, and help decide if they suit your requirements.
            • Add a data object to this node
            • Check the given index
            • Add data to the tree
            • Return the child with the given index
            • Update a model field
            • Sets the attributes and saves the object
            • Copy file to destination
            • Executes a function with exponential backoff
            • Run a function with heartbeats
            • Send a heartbeat to the server
            • Validate data object
            • Update data node
            • Create a new input set from a data_channel
            • Copies the file to the destination
            • Create a new data channel
            • Validate the data structure
            • Delete the container
            • Save the contents of the task
            • Read YAML file as YAML
            • Write content to file
            • Update data object
            • Copy data from source to destination
            • Get Google Cloud Storage client
            • Creates a TaskAttemptInput object
            • Return a list of data nodes that are ready to be ready
            • Run the Docker container
            Get all kandi verified functions for this library.

            loom Key Features

            No Key Features are available at this moment for loom.

            loom Examples and Code Snippets

            No Code Snippets are available at this moment for loom.

            Community Discussions

            QUESTION

            Problem with RecyclerView and Navigation Drawer
            Asked 2021-Jun-15 at 13:55

            I'm doing a Group Chat with Firebase and currently I'm using a RecyclerView to display chat messages and I'm having a problem. When you open the app in the fragmented home and you go to chat activity and start chatting (adding elements to recycler view) all goes fine. But, when you go via the NavigationDrawer to another fragment and get back to the chat fragment using again this Navigation Drawer. When you add one element in the chat it appears all in the blank it just displays the last message. Anybody knows why does this happens?

            Here I leave the RecyclerView Adapter Code:

            ...

            ANSWER

            Answered 2021-Jun-15 at 13:55

            To solve your problem you can just remove the OnResume method because you are initializing the array every time you change between fragments and that is the problem.

            Source https://stackoverflow.com/questions/67920152

            QUESTION

            How to update the state of nested json object in react using hooks
            Asked 2021-Jun-13 at 20:25

            I have a global state of the format like this:

            ...

            ANSWER

            Answered 2021-Jun-13 at 20:22
            Issue

            I think the main issue is the usage of state as a React key on the Container component in App. Each time state updates you are specifying a new React key, and React will handle this by unmounting the previous version and mounting a new version of Container.

            Source https://stackoverflow.com/questions/67962300

            QUESTION

            AWS REST API Gateway Integration Response Mapping - Lambda Error Regex issue
            Asked 2021-May-06 at 04:30

            I would like to return a response code of 400 to the client after throwing an error in my Lambda function. (via REST API - GET)

            Here is the response from the Lambda function:

            ...

            ANSWER

            Answered 2021-May-06 at 04:30

            For anyone coming across the same problem in the future. I have found out the following 2 things:

            1. After trying again to set .*400.* a little later it worked fine. Of course, this may not be a good idea, because if you return any results, that contain 400 anywhere in their response, they could incorrectly trigger a 400 HTTP response.

            2. The workaround I found was to use .*Invalid Input.*. Since it is not expected that regular results returned from the API would contain this phrase, this should work reliably.

            Source https://stackoverflow.com/questions/67357716

            QUESTION

            SwiftUI Picker blocking input when clipped
            Asked 2021-May-01 at 05:36

            The code example below shows 2 rows as HStacks. The second row contains a Picker which is clipped to 40 x 80

            For some reason, it's still creating an invisible view which is blocking user interaction with the button in row 1.

            The Toggle switch is drawn above the invisible view, so that works. But the button is drawn beneath it and doesn't work.

            If you swap the order of Toggle and Button so Button is on the left, the Button functions normally.

            Video example here - https://www.loom.com/share/83542e34b9a546439ad4d99128ff51b6

            Very grateful to anyone who can help me figure this out.

            ...

            ANSWER

            Answered 2021-May-01 at 05:36

            This is pretty strange behavior. I guess even though you clip the picker, the background is technically still drawn but not visible. Anyway, it seems to work if you disable Hit Testing on the background layer of the Picker:

            Source https://stackoverflow.com/questions/67343123

            QUESTION

            Is this a bug of *ngIf or just something that I have missed?
            Asked 2021-Apr-24 at 05:49

            I'm doing reactive form validation I have found out that this *ngIf has a bug on checking a valid email pattern. When we write an invalid email and click outside of the input *ngIf for pattern check will always return even if the input is valid. Please check the demo video.

            Here's the Video of the bug please check

            .html

            ...

            ANSWER

            Answered 2021-Apr-24 at 05:49

            I think this situation is happening cause the div messages are not nested. Once the user clicks outside, form.get('email').errors will become null, so therefore the the above scenario occurs..

            The *ngIf on the first div should have a condition such that only upon touch or some condition like that and only then should it display the nested div messages like 'field is required' or 'Enter valid email'...

            Please try this code to verify:

            Source https://stackoverflow.com/questions/67239180

            QUESTION

            Altair: geo_shape doesn't work with selection
            Asked 2021-Apr-08 at 20:24

            I am working on a Choropleth map that will display the similarities between different states. So when you select a state from a dropdown, the map will show the similarity it has to other states.

            For this, I am using 2 datasets:

            • DatasetA: a long-form dataframe, with 3 columns: State 1, State 2, and the similarity between them.
            • DatasetB: a GeoDataFrame that contains the geometry of each state.

            When I try to plot this without the selection, then it works:

            ...

            ANSWER

            Answered 2021-Apr-08 at 20:24

            I got this to work by using a transform_fold. The problem is that the transform_lookup only matches once, so if there are multiple matches in the dataset, it ignores them. So you have to use a wide-form dataset and then use the transform_fold to convert it back into long-form.

            Source https://stackoverflow.com/questions/66988074

            QUESTION

            WordPress Customer Role users Redirect to home page for some reason
            Asked 2021-Mar-19 at 18:39

            I created a user profile page all users are fine but when a user with a customer role access the profile page its redirected to the home page, can anyone please check what this happening please watch the video here https://www.loom.com/share/fb2ab2644b9d4da5b41ab7a00e79faa8

            ...

            ANSWER

            Answered 2021-Mar-19 at 18:39

            If you have a Yoast SEO plugin check if the redirect is apply in your customer, or you can check if you subscription plugin have a redirection to the index page.

            Source https://stackoverflow.com/questions/66710132

            QUESTION

            How to Stop Jumping Position fixed element on scrolling
            Asked 2021-Feb-18 at 01:20

            Please anybody help spend 3 days on this but still stuck. I created a section on my site where am playing video-based scroll position to section but when you scroll to the first section or back to the last section from the bottom side video frame jumps. actually, I don't know how I make position fixed element to top:0 inside relative container currently I have video frame position: absolute which is top:0 and correct but when I scroll am changing position:absolute to position fixed but that can't work with top:0 because fixed element can't work to the relative container so am adding top:35% please watch the video here https://www.loom.com/share/c29a3cadb3dc4420a59baaae072c1cec

            and here is the site link https://qa.modulos.ai/product-overview/

            ...

            ANSWER

            Answered 2021-Feb-18 at 01:20

            Okay I found your solution!

            Remove everything that you have, and remove those classes not-sticky-top and sticky not-sticky-bottom

            And your main problem is that body has overflow: hidden; which you must remove so that sticky can work, like this link says

            Change your css like this:

            Source https://stackoverflow.com/questions/66251814

            QUESTION

            Do react functional and class components render differently?
            Asked 2021-Feb-02 at 00:41

            When I use a react functional component with some state manager (I'm using recoil.js) and I try to update the state with a react hook it only calls useEffect when the state is different than the original state. When I was looming on stack overflow on how components rerender, they were talking about class components, and how they render every time setState is called. Is this just a difference between how the two components type work or am I just misunderstanding it?

            This was my code test for function components:

            ...

            ANSWER

            Answered 2021-Jan-12 at 09:03

            Yes and no. I wouldn't say "they render differently", but there is a difference between how it is determined when to renrender a component. I understand how one could expect that the default behavior is the same, however, I also understand that introducing a new state system (useState) gave the developers an opportunity to improve the default behavior.

            I don't know how recoil works specifically, but I would assume it behaves at least like useState wrt rerendering the component. From the documentation:

            If you update a State Hook to the same value as the current state, React will bail out without rendering the children or firing effects. (React uses the Object.is comparison algorithm.)

            So this confirms your observation.

            But let me be clear: This is not a characteristic of function components, that's just how useState works. You could develop your own state management hook which behaves differently.

            Now looking add class components, from the setState documentation:

            setState() will always lead to a re-render unless shouldComponentUpdate() returns false

            And about shouldComponentUpdate:

            Use shouldComponentUpdate() to let React know if a component’s output is not affected by the current change in state or props. The default behavior is to re-render on every state change, and in the vast majority of cases you should rely on the default behavior.

            shouldComponentUpdate() is invoked before rendering when new props or state are being received. Defaults to true.

            The first part isn't as clear ("The default behavior is to re-render on every state change", but is setting the same value a "change"?), but the second paragraph makes it clear. shouldComponentUpdate returns true by default, so the component will always rerender when setState was called.

            If you implement shouldComponentUpdate to call Object.is you would replicate the behavior of useState.

            Source https://stackoverflow.com/questions/65678784

            QUESTION

            CSS Animation Jump Issue on Mobile
            Asked 2021-Jan-26 at 10:28

            So I have an issues on mobile view for this accordion I made.

            Once you have clicked through the menu and to the main content when you select between the different elements there is slight jump before the animation runs.

            I can't figure out why it would be doing this or if it could be something to do with the animation timings I have used, so any suggestions would be welcome.

            The easiest way to see what I have done is on the CodePen link below.

            CodePen Link: https://codepen.io/nickelse/full/dypEyMK

            Video of Issue: https://www.loom.com/share/cd1280d898d64b58abbfc1d7ce1fc824

            ...

            ANSWER

            Answered 2021-Jan-26 at 10:28

            The jumping issue is because of your with values between the active and the inactive states. In following example where you can run the code i only changed the values for the active item and it solved the issue on mobile. Use more accurate width and max-width values with calculating the max-width for the sections in every state.

            Source https://stackoverflow.com/questions/65899261

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            Incorrect authentication of application WebSocket connections in Loom Desktop for Mac up to 0.16.0 allows remote code execution from either malicious JavaScript in a browser or hosts on the same network, during periods in which a user is recording a video with the application. The same attack vector can be used to crash the application at any time.

            Install loom

            You can install using 'pip install loom' or download it from GitHub, PyPI.
            You can use loom like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/StanfordBioinformatics/loom.git

          • CLI

            gh repo clone StanfordBioinformatics/loom

          • sshUrl

            git@github.com:StanfordBioinformatics/loom.git

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