coral-basecaller

by fmfi-compbio Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | coral-basecaller Summary

coral-basecaller is a Python library. coral-basecaller has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

coral-basecaller

Support

Quality

Security

License

Reuse

Support

coral-basecaller has a low active ecosystem.

It has 2 star(s) with 0 fork(s). There are 5 watchers for this library.

It had no major release in the last 6 months.

coral-basecaller has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of coral-basecaller is current.

Quality

coral-basecaller has no bugs reported.

Security

coral-basecaller has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

coral-basecaller does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

coral-basecaller releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are available. Examples and code snippets are not available.

Top functions reviewed by kandi - BETA

kandi has reviewed coral-basecaller and discovered the below as its top functions. This is intended to give you an instant insight into coral-basecaller implemented functionality, and help decide if they suit your requirements.

Perform batch processing .
Finalizer processing .
Initialize the candidates .
Call callbacks
Split a single signal into chunks .
Slice the samples from start to end
Write base calls to a file
Terminate the thread .
Calculate median median and MAD of x .
List all files in a directory .

Get all kandi verified functions for this library.

coral-basecaller Key Features

No Key Features are available at this moment for coral-basecaller.

coral-basecaller Examples and Code Snippets

No Code Snippets are available at this moment for coral-basecaller.

Community Discussions

No Community Discussions are available at this moment for coral-basecaller.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install coral-basecaller

First you need Coral TPU accelerator plugged into your USB port. Before proceeding further, ensure that you have python3 (~3.7) installed and that /bin/env python refers to it. If you are using conda, you can just create environment as conda create --name myenv python=3.7 and then activate myenv. Alternatively, you can try adjusting python to python3 in basecall.py and use pip3 instead of pip. Then install edge TPU runtime. We strongly recommend using maximum frequency version and plugging the device into USB3 port. Install requirements via pip install -r requirements.txt. Note that we have fixed version for Linux/Ubuntu so if you are on Mac you should edit requirements to correct platform.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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