warpstr | Determining tandem repeat lengths using raw nanopore

by fmfi-compbio Python Version: v0.3.0 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | warpstr Summary

warpstr is a Python library. warpstr has no bugs, it has no vulnerabilities and it has low support. However warpstr build file is not available and it has a Non-SPDX License. You can download it from GitHub.

WarpSTR is an alignment-free algorithm for analysing STR alleles using nanopore sequencing raw reads. The method uses guppy basecalling annotation output for the extraction of region of interest, and dynamic time warping based state automata for calling raw signal data. The tool can be configured to account for complex motifs containing interruptions and other variations such as substitutions or ambiguous bases. See our preprint at: See below for some quick steps how to install and run WarpSTR, or refer to more detailed documentation.

Support

Quality

Security

License

Reuse

Support

warpstr has a low active ecosystem.

It has 6 star(s) with 0 fork(s). There are 2 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 0 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of warpstr is v0.3.0

Quality

warpstr has no bugs reported.

Security

warpstr has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

warpstr has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

warpstr releases are available to install and integrate.

warpstr has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of warpstr

Get all kandi verified functions for this library.

warpstr Key Features

No Key Features are available at this moment for warpstr.

warpstr Examples and Code Snippets

No Code Snippets are available at this moment for warpstr.

Community Discussions

No Community Discussions are available at this moment for warpstr.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install warpstr

WarpSTR can be installed using conda or pipenv. To install conda, please follow the official guide. To install pipenv, simple pip install pipenv should suffice. WarpSTR was tested in Ubuntu 20.04 and Ubuntu 22.04. Used Python version is 3.7.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: