infercnvpy | Infer copy number variation from scRNA-seq data

by icbi-lab Python Version: 0.4.5 License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | infercnvpy Summary

infercnvpy is a Python library. infercnvpy has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However infercnvpy build file is not available. You can install using 'pip install infercnvpy' or download it from GitHub, PyPI.

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

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Quality

Security

License

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Support

infercnvpy has a low active ecosystem.

It has 78 star(s) with 22 fork(s). There are 3 watchers for this library.

There were 2 major release(s) in the last 12 months.

There are 19 open issues and 23 have been closed. On average issues are closed in 40 days. There are 5 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of infercnvpy is 0.4.5

Quality

infercnvpy has 0 bugs and 0 code smells.

Security

infercnvpy has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

infercnvpy code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

infercnvpy is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

infercnvpy releases are available to install and integrate.

Deployable package is available in PyPI.

infercnvpy has no build file. You will be need to create the build yourself to build the component from source.

It has 1021 lines of code, 54 functions and 24 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed infercnvpy and discovered the below as its top functions. This is intended to give you an instant insight into infercnvpy implemented functionality, and help decide if they suit your requirements.

Infer the confidence interval of a given variable
Calculate running mean for each chromosome
Calculate the running mean
Sort a list
Ensure a is an array
Inner function
Get the reference for the given column
Read scevan data
Get chr positions from chr_pos_array
Compute the ith regular expression matrix
Choose MPX reponse
R Compute the TSNE
Calculate PCA
Parse the return section
Process return lines

Get all kandi verified functions for this library.

infercnvpy Key Features

No Key Features are available at this moment for infercnvpy.

infercnvpy Examples and Code Snippets

No Code Snippets are available at this moment for infercnvpy.

Community Discussions

No Community Discussions are available at this moment for infercnvpy.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install infercnvpy

You can install using 'pip install infercnvpy' or download it from GitHub, PyPI.
You can use infercnvpy like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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