admix | admixture analysis tool for Python that supports raw data
kandi X-RAY | admix Summary
kandi X-RAY | admix Summary
Admix is a simple tool to calculate ancestry composition (admixture proportions) from SNP raw data provided by various DNA testing vendors (such as 23andme and AncestryDNA).
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Top functions reviewed by kandi - BETA
- Calculate the best fitting results for a list of models
- Extract genotypes from a csv file
- Return frequency file name for a given model
- Name of snp file for a given model
- Convenience function
- Check if the file exists
- Computes the likelihood of the distribution
- Convenience method that parses and returns a dictionary of three - three - letter data
- Convert ftdna2 to genotypes
- Generate a single gene
- Convert a TDNA file into a dictionary
- Calculate genotype matches
- Calculate an admix fraction
- Read a model
- Read raw data
- Returns a list of population populations
- Number of populations in a model
- Argument parser
- List of available models
admix Key Features
admix Examples and Code Snippets
Community Discussions
Trending Discussions on admix
QUESTION
I want to generate forms for a resource that has a postgres jsonb column :data, and I want the schema for these forms to be stored in a table in the database. After a lot of research I am 90% there but my method fails in ActiveAdmin forms upon create (not update). Can anyone explain this?
Sorry for the long code snippets. This is a fairly elaborate setup but I think it would be of some interest since if this works one could build arbitrary new schemas dynamically without hard-coding.
I am following along this previous discussion with Rails 6 and ActiveAdmin 2.6.1 and ruby 2.6.5.
I want to store Json Schemas in a table SampleActionSchema that belong_to SampleAction (using the json-schema gem for validation)
...ANSWER
Answered 2020-May-06 at 23:26SOLUTION:
I traced what AA was doing to figure out the minimum number of commands needed. It was necessary to add code to build_new_resource to ensure that any new resource AA built had the correct :category field, and once doing so, make the call to dynamically add the store_accessor keys to the newly built instance.
Now users can create their own original schemas and records that use them, without any further programming! I hope others find this useful, I certainly will.
There are a couple ugly solutions here, one is that adding the parameters to the active admin new route call is not expected by AA, but it still works. I guess this parameter could be passed in some other way, but quick and dirty does the job. The other is that I had to have the form generate a session variable to store what kind of schema was used, in order for the post-form-submission build to know, since pressing the "Create Move" button clears the params from the url.
The operations are as follows: for a model called Move with field :data that should be dynamically serialized into fields according to the json schema tables, both
admin/moves/new?category="cleave"
and admin/moves/#/edit
find the "cleave" schema from the schema table, and correctly create and populate a form with the serialized parameters. And, direct writes to the db
QUESTION
I have some files like the one below. Each contains 26 lines, which consist of a sample name and a number of 0's and 1's.
...ANSWER
Answered 2020-Apr-27 at 19:31Considering the following example. Based , on your code, removing as.matrix
when you load the dataset should make you be able to obtain a similar structure)
QUESTION
I am trying to use the "ifelse" function in R grouping but it doesn't work. My data is something like this:
...ANSWER
Answered 2020-Jan-10 at 17:27Example data.
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