pycogent | PyCogent : Official repository for software and unit tests

by pycogent Python Version: Current License: No License

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kandi X-RAY | pycogent Summary

pycogent is a Python library. pycogent has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can install using 'pip install pycogent' or download it from GitHub, PyPI.

PyCogent: Official repository for software and unit tests

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pycogent has a low active ecosystem.

It has 80 star(s) with 57 fork(s). There are 20 watchers for this library.

It had no major release in the last 6 months.

There are 25 open issues and 55 have been closed. On average issues are closed in 784 days. There are 10 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pycogent is current.

Quality

pycogent has 0 bugs and 0 code smells.

Security

pycogent has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pycogent code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

pycogent does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

pycogent releases are not available. You will need to build from source code and install.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

pycogent saves you 135027 person hours of effort in developing the same functionality from scratch.

It has 141192 lines of code, 10120 functions and 629 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed pycogent and discovered the below as its top functions. This is intended to give you an instant insight into pycogent implemented functionality, and help decide if they suit your requirements.

Assign a taxonomy to the given sequences
Parse rp assignment line
Calculates lineage for a given RDP taxa
Join two nodes
Plot the coordinates of the distribution
Draw arrows
Make feature styles
Create a Path Patch object
Parse command line parameters
Return a TreeParseError
R Compute the length of a pair of pairs
Calculate the kendalls Tau tau s tau coefficient
Calculate transition matrix
Perform conflict elimination on pairs
Get result paths
Finds the minimum gain between conflicts
Create a log - likelihood defn
Find the root of a given function
Inverse order of pairs
Find the maximum conflicts between conflicts
Returns a dictionary of result paths to output files
Simplify the model
Parse a string
Given a pair of pairs and a pair of pairs returns a new PairedRegion
Generate a CAI3 3
Return ASCII art

Get all kandi verified functions for this library.

pycogent Key Features

No Key Features are available at this moment for pycogent.

pycogent Examples and Code Snippets

No Code Snippets are available at this moment for pycogent.

Community Discussions

Trending Discussions on pycogent

Python Conda install old version of matplotlib keyerror linux3

QUESTION

Python Conda install old version of matplotlib keyerror linux3

Asked 2018-Feb-08 at 14:10

While trying to install the tool PrimerProspector from the development version (SVN trunk, as instructed here: http://pprospector.sourceforge.net/install/install.html) I tried creating a conda environment to resolve the dependencies in an elegant way (I am running an Ubuntu server 16.04.3 LTS machine with conda 4.4.8). The PyCogent and Numpy can easily be installed in the required version using pip install when the environment (with python 2.6) is activated. I have conda forge in my channels. However, when running pip install matplotlib==0.98.5.3 I run into the issue that there is no such version available (Could not find a version that satisfies the requirement matplotlib==0.98.5.3 (from versions: 0.86, 0.86.1, 0.86.2, 0.91.0, 0.91.1, 1.0.1, 1.1.0, 1.1.1, 1.2.0, 1.2.1, 1.3.0, 1.3.1, 1.4.0, 1.4.1rc1, 1.4.1, 1.4.2, 1.4.3, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 2.0.0b1, 2.0.0b2, 2.0.0b3, 2.0.0b4, 2.0.0rc1, 2.0.0rc2, 2.0.0, 2.0.1, 2.0.2, 2.1.0rc1, 2.1.0, 2.1.1, 2.1.2)). Additionally I get an InsecurePlatformWarning which is apparently common with an older Python distribution. Nevertheless, as the source was available I tried using pip to install from the tarball. This gives me the rather uninformative KeyError: 'linux3':

...

ANSWER

Answered 2018-Feb-08 at 14:10

The mathplotlib version you're trying to use has been released years before the release of Linux 3.0. That's why it has no support for sys.platform='linux3'. And the Python version you're using is older than 2.7.2, which dropped setting the linux3 value.

You can try to just edit the setupext.py file in the tarball, and in the dict basedir add config for linux3, which would be the same as for linux and linux2.

Source https://stackoverflow.com/questions/48632617

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pycogent

You can install using 'pip install pycogent' or download it from GitHub, PyPI.
You can use pycogent like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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