COVID-related datasets
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Biology sequence manager, written in Python
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Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
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A lightweight tool for loading genomic data in deep learning applications
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single cell sequencing data anlysis
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meg-mri-surrogate-biomarkers-aging-2020by dengemann
Python 
2 Version:Current License: Permissive (BSD-3-Clause)
library and scripts for data analysis and visualization for Engemann at et al. 2020
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Fast Long-noncoding RNA Assembly Workflow
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downsample fasta/fastq files to given number of base pairs
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CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).
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Extracts specific samples from a VCF file, creating a new filtered VCF file
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ADD FOR LINE: line.me/ti/p/~fuck.you__
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An automated analysis pipeline PHANtAsTiC: Public Health Analysis of Nucleotides through Assembly, Typing and Clustering
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Python script to identify the journal from which you read the highest number of papers based on your Zotero library.
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A simple script to decode the genome DNA binary sequence (CTF Challenge)
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Class scheduling using Genetic Algorithm
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Small Nucleic Acid Instrument for Long Sequences
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General purpose sequence alignment for Javascript
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The research work on Cell Formation Problem
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Canonical Decomposition of Data-Independent-Acquired Spectra
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HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities)
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Lightly modified versions of htslib and bcftools to merge VCF streams.
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A script to make downloading of SRA/GEO data easier
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tools for single-cell RNAseq analysis
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An Amino Acid Variant Format parser for Python.
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A different take on codon optimization
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Software for calculating Structural Interaction Fingerprints (SIFts) in nucleic acids - ligands complexes.
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Extracts all of the possible genes from a string of DNA
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Tool for Creating Subnetworks from Lists of Mammalian Genes or Proteins
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FASTA In A Terminal
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Convert between common sequence alignment formats
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Bioinformatics - Computational approach of biology
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maskdump is a ruby gem to dump database and mask its personal data.
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Uncovering-association-networks-through-an-eQTL-analysis-involving-human-miRNAs-and-lincRNAsby paulorobertobranco
Python 2 Version:Current
License: No License (No License)
License: No License (No License)The present study cataloged the vast landscape of the regulatory effect of microRNAs (miRNA) and long intergenic noncoding RNAs (lincRNA) in the human genome. An expression quantitative trait loci (eQTL) analysis was used to identify genetic variants associated with miRNA and lincRNA and whose genotypes affect gene expression. Association networks were built for eQTL associated to traits of clinical and/or pharmacological relevance.
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A Sentube corpus analyzer using NLTK
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University_Service_Center_Appby blackswanblood
Java 2 Version:Current License: No License (No License)
License: No License (No License)Complete GUI final version (CPSC210 project extension)
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Python package to run a Monte Carlo analysis using PhreeqC
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single-cell RNAseq ATACseq processing pipeline
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ITMO Genome Assembler
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time-series-analysis-ml-honours-thesisby Oliverdeb
Python 2 Version:Current License: No License (No License)
License: No License (No License)Repository for thesis resources,
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A variety of tools for working with Camtasia and Audiate
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A program that identifies a person based on their DNA by analysing Short Tandem Repeats (https://en.wikipedia.org/wiki/STR_analysis).
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Rosalind algorithmic DNA solving
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A command-line utility for calculating GC percentages of genome sequences
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ViralLink is a systems biology workflow which reconstructs and analyses networks representing the effect of viral infection on specific human cell types.
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covid-databy CLAIRE-COVID-T4
COVID-related datasets
Python 2Updated: 4 y ago License: Permissive (CC-BY-4.0)
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linnaeoby beowulfey
Biology sequence manager, written in Python
Python 2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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Pcircby Lilab-SNNU
Python 2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)
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ctdnaby reiterlab
Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
Python 2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)
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GenomeLoaderby daquang
A lightweight tool for loading genomic data in deep learning applications
Python 2Updated: 4 y ago License: Permissive (MIT)
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singleCellby xiachenrui
single cell sequencing data anlysis
Python 2Updated: 4 y ago License: No License (No License)
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MyToolsby Jie-Yuan
Python 2Updated: 5 y ago License: No License (No License)
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meg-mri-surrogate-biomarkers-aging-2020by dengemann
library and scripts for data analysis and visualization for Engemann at et al. 2020
Python 2Updated: 3 y ago License: Permissive (BSD-3-Clause)
2Updated: 3 y ago License: Permissive (BSD-3-Clause)Support
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FLORAby AlexHelloWorld
Fast Long-noncoding RNA Assembly Workflow
Python 2Updated: 5 y ago License: No License (No License)
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fast_downsampleby luptior
downsample fasta/fastq files to given number of base pairs
Python 2Updated: 5 y ago License: No License (No License)
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CrossSpeciesWorkflowby eliza-m
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).
Python 2Updated: 4 y ago License: No License (No License)
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VCF_Sample_Extractorby mjtiv
Extracts specific samples from a VCF file, creating a new filtered VCF file
Python 2Updated: 6 y ago License: No License (No License)
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ECMarkerby daifengwanglab
Python 2Updated: 3 y ago License: No License (No License)
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SLACKBOTby Galank-07
ADD FOR LINE: line.me/ti/p/~fuck.you__
Python 2Updated: 6 y ago License: No License (No License)
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phantastic-galaxyby aknijn
An automated analysis pipeline PHANtAsTiC: Public Health Analysis of Nucleotides through Assembly, Typing and Clustering
Python 2Updated: 1 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 1 y ago License: Strong Copyleft (GPL-3.0)Support
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where-to-publish-zoteroby barichello
Python script to identify the journal from which you read the highest number of papers based on your Zotero library.
Python 2Updated: 5 y ago License: No License (No License)
2Updated: 5 y ago License: No License (No License)Support
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DNA-Cipher-Script-CTFby karma9874
A simple script to decode the genome DNA binary sequence (CTF Challenge)
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
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Class-Schedulingby ahmedbilal
Class scheduling using Genetic Algorithm
Python 2Updated: 4 y ago License: No License (No License)
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SNAILSby dholab
Small Nucleic Acid Instrument for Long Sequences
Python 2Updated: 4 y ago License: No License (No License)
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js-sequence-alignerby ohtangza
General purpose sequence alignment for Javascript
JavaScript 2Updated: 8 y ago License: No License (No License)
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CellFormationby CodeSopranos
The research work on Cell Formation Problem
Python 2Updated: 3 y ago License: Permissive (MIT)
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c
candiaby fburic
Canonical Decomposition of Data-Independent-Acquired Spectra
Python 2Updated: 3 y ago License: Proprietary (Proprietary)
2Updated: 3 y ago License: Proprietary (Proprietary)Support
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HOME-BIOby carlferr
HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities)
Python 2Updated: 3 y ago License: Weak Copyleft (LGPL-3.0)
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xsamtoolsby DataBiosphere
Lightly modified versions of htslib and bcftools to merge VCF streams.
Python 2Updated: 2 y ago License: Permissive (MIT)
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sradownloaderby s-andrews
A script to make downloading of SRA/GEO data easier
Python 2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)Support
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docker-R-singlecellby chrisamiller
tools for single-cell RNAseq analysis
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
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PyAAVFby winhiv
An Amino Acid Variant Format parser for Python.
Python 2Updated: 5 y ago License: Permissive (Apache-2.0)
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codon-harmonizerby smsaladi
A different take on codon optimization
Python 2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
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fingeRNAtby n-szulc
Software for calculating Structural Interaction Fingerprints (SIFts) in nucleic acids - ligands complexes.
Python 2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)Support
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GeneFinderFromDNAby sarthakkg
Extracts all of the possible genes from a string of DNA
Java 2Updated: 3 y ago License: No License (No License)
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Genes2Networksby MaayanLab
Tool for Creating Subnetworks from Lists of Mammalian Genes or Proteins
Java 2Updated: 5 y ago License: Permissive (Apache-2.0)
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AlignmentConvertersby malonge
Convert between common sequence alignment formats
Python 2Updated: 4 y ago License: No License (No License)
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Bioinformaticsby robustTechie
Bioinformatics - Computational approach of biology
Python 2Updated: 4 y ago License: No License (No License)
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maskdumpby mnc
maskdump is a ruby gem to dump database and mask its personal data.
Ruby 2Updated: 4 y ago License: Permissive (MIT)
2Updated: 4 y ago License: Permissive (MIT)Support
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U
Uncovering-association-networks-through-an-eQTL-analysis-involving-human-miRNAs-and-lincRNAsby paulorobertobranco
The present study cataloged the vast landscape of the regulatory effect of microRNAs (miRNA) and long intergenic noncoding RNAs (lincRNA) in the human genome. An expression quantitative trait loci (eQTL) analysis was used to identify genetic variants associated with miRNA and lincRNA and whose genotypes affect gene expression. Association networks were built for eQTL associated to traits of clinical and/or pharmacological relevance.
Python 2Updated: 5 y ago License: No License (No License)
2Updated: 5 y ago License: No License (No License)Support
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sentube-sentimentby Abdelghafour01
A Sentube corpus analyzer using NLTK
Python 2Updated: 6 y ago License: No License (No License)
2Updated: 6 y ago License: No License (No License)Support
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umi-collapser-internalby broadinstitute
Python 2Updated: 4 y ago License: No License (No License)
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University_Service_Center_Appby blackswanblood
Complete GUI final version (CPSC210 project extension)
Java 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
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PhreeqpyMonteCarloby Toby-Mills
Python package to run a Monte Carlo analysis using PhreeqC
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
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pyflow-single-cellby crazyhottommy
single-cell RNAseq ATACseq processing pipeline
Python 2Updated: 3 y ago License: Permissive (MIT)
2Updated: 3 y ago License: Permissive (MIT)Support
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Utility-codesby microDM
Python 2Updated: 3 y ago License: No License (No License)
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crabby fakedrtom
Python 2Updated: 4 y ago License: No License (No License)
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time-series-analysis-ml-honours-thesisby Oliverdeb
Repository for thesis resources,
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
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Camtasia_and_Audiate_toolsby gqmaguirejr
A variety of tools for working with Camtasia and Audiate
Python 2Updated: 3 y ago License: No License (No License)
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d
dnaby benrout
A program that identifies a person based on their DNA by analysing Short Tandem Repeats (https://en.wikipedia.org/wiki/STR_analysis).
Python 2Updated: 3 y ago License: Permissive (MIT)
2Updated: 3 y ago License: Permissive (MIT)Support
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DNAby sneakyweasel
Rosalind algorithmic DNA solving
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
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GC_analysisby tonyyzy
A command-line utility for calculating GC percentages of genome sequences
Python 2Updated: 5 y ago License: Permissive (Apache-2.0)
2Updated: 5 y ago License: Permissive (Apache-2.0)Support
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ViralLinkby korcsmarosgroup
ViralLink is a systems biology workflow which reconstructs and analyses networks representing the effect of viral infection on specific human cell types.
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
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