Support
Quality
Security
License
Reuse
Gene-specific analysis of 3' end RNA tail length modifications
Support
Quality
Security
License
Reuse
An automated snp phylogeny pipeline
Support
Quality
Security
License
Reuse
DEtail-seq Analysis Pipline
Support
Quality
Security
License
Reuse
A set of methods combining programs to calculate the conservation score of the amino acids in a sequence
Support
Quality
Security
License
Reuse
Ontology-guided Radiomics Analysis Workflow (O-RAW)
Support
Quality
Security
License
Reuse
Python Ensembl Gene Annotation code source repository
Support
Quality
Security
License
Reuse
A script and guide on how to move data from data soruces to staging and build a complete data warehouse on BigQuery
Support
Quality
Security
License
Reuse
DIBSI Data Carpentry Genomics
Support
Quality
Security
License
Reuse
Daily analysis of the top100 cryptos from coinmarketcap
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
Analysis of Conservation within Insect Dscam Genes
Support
Quality
Security
License
Reuse
Utilities for RNA-seq analyses
Support
Quality
Security
License
Reuse
hi sense remote on off
Support
Quality
Security
License
Reuse
This repository is for making a list of all the libraries and tools we use in our projects. Thus having a single source to find all our tools.
Support
Quality
Security
License
Reuse
dr_sasa plot script
Support
Quality
Security
License
Reuse
C
Corona-Analysis-and-Predictionby anuvrat29
Python 
2 Version:Current
License: No License (No License)
License: No License (No License)This project is regarding corona virus analysis and prediction of number of cases in future.
Support
Quality
Security
License
Reuse
S
Saleae-Hex-Dec-Char-to-Terminalby JaredReabow
Python 2 Version:Current License: Strong Copyleft (GPL-3.0)
high level analyser for converting low level analyser output to human readable data
Support
Quality
Security
License
Reuse
Region based insertion detection from long reads
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
Contains plotting scripts, examples, and other small scripts relevant to CCMgen and the corresponding publication.
Support
Quality
Security
License
Reuse
Scripts relevant to Self-immunopeptidome and Cancer manuscript
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
Genomic Data Commons API wrapper
Support
Quality
Security
License
Reuse
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Support
Quality
Security
License
Reuse
The tools is used to extract PPCG defined QC metrics from Sanger variant calling pipeline results.
Support
Quality
Security
License
Reuse
Detecting somatic small variants in paired tumor and normal sequencing data with convolutional neural network
Support
Quality
Security
License
Reuse
Various gene identifiers -> ENSGID
Support
Quality
Security
License
Reuse
bioinformatic tools related to protein contact map.
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
Generate sequence features for viral sequences: codon, codon pair, nucleotide, dinucleotide biases
Support
Quality
Security
License
Reuse
Convert covid-19 amino acid sequence into charge sequence, and calculates complex correlations among viruses.
Support
Quality
Security
License
Reuse
Repository of various practice part of subjects on BUT FEKT for BPC-IBE
Support
Quality
Security
License
Reuse
Algebraic Structural Pseudoknot RNA Alignment
Support
Quality
Security
License
Reuse
c
cluster-paired-end-tagsby cellular-genomics
Python 2 Version:Current License: Permissive (Apache-2.0)
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
Support
Quality
Security
License
Reuse
i
interface_structure_evolutionby LeahPollet
Python 2 Version:Current License: No License (No License)
License: No License (No License)General principles of structure and evolution of protein-protein interaction interfaces
Support
Quality
Security
License
Reuse
Yet another version of PDBx/mmCIF Python implementation
Support
Quality
Security
License
Reuse
Toolkit for annotating bam files with haplotype SNVs
Support
Quality
Security
License
Reuse
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data
Support
Quality
Security
License
Reuse
The analysis scripts for SARS-CoV-2 RNA structure
Support
Quality
Security
License
Reuse
hier wirds bald speckfeist
Support
Quality
Security
License
Reuse
Python recipes for Bioinformatics beginners
Support
Quality
Security
License
Reuse
alignement de sequence ADN
Support
Quality
Security
License
Reuse
Genomic Pipelines (Mapping + Variant Calling) from NGS Data
Support
Quality
Security
License
Reuse
An object-oriented Python library for simulating biological sequences
Support
Quality
Security
License
Reuse
Here are some basic python scripts working for computational problems in Biology.
Support
Quality
Security
License
Reuse
A simply tool for pick primers from a DNA sequence
Support
Quality
Security
License
Reuse
microbial associaton networks
Support
Quality
Security
License
Reuse
snakemake long read assembly pipeline
Support
Quality
Security
License
Reuse
T
TF_MMby lvelve0901
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
J
JLA_tailseqby clocheltree
Gene-specific analysis of 3' end RNA tail length modifications
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
s
snpiphyby bogemad
An automated snp phylogeny pipeline
Python 2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
D
DEtail-seqby PEHGP
DEtail-seq Analysis Pipline
Python 2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 3 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
c
consScoreby suliat16
A set of methods combining programs to calculate the conservation score of the amino acids in a sequence
Python 2Updated: 3 y ago License: Permissive (MIT)
2Updated: 3 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
O
O-RAWby zhenweishi
Ontology-guided Radiomics Analysis Workflow (O-RAW)
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
e
ensembl-genesby Ensembl
Python Ensembl Gene Annotation code source repository
Python 2Updated: 3 y ago License: Permissive (Apache-2.0)
2Updated: 3 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
B
BigQuery-ETLby duyluandethuong
A script and guide on how to move data from data soruces to staging and build a complete data warehouse on BigQuery
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
2
2018-06-27-DIBSI-Genomicsby dib-lab
DIBSI Data Carpentry Genomics
Python 2Updated: 6 y ago License: Proprietary (Proprietary)
2Updated: 6 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
c
crypto-analysisby mauryaland
Daily analysis of the top100 cryptos from coinmarketcap
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
C
CryoGANby harshit-gupta-epfl
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
A
AnoConElyby Wgelyjr
Analysis of Conservation within Insect Dscam Genes
Python 2Updated: 6 y ago License: No License (No License)
2Updated: 6 y ago License: No License (No License)Support
Quality
Security
License
Reuse
r
rnaseq-utilsby francois-a
Utilities for RNA-seq analyses
Python 2Updated: 5 y ago License: Permissive (BSD-3-Clause)
2Updated: 5 y ago License: Permissive (BSD-3-Clause)Support
Quality
Security
License
Reuse
h
homebridge-hisenseby stoner221
hi sense remote on off
JavaScript 2Updated: 5 y ago License: No License (No License)
2Updated: 5 y ago License: No License (No License)Support
Quality
Security
License
Reuse
T
ToolBoxby Torquevision
This repository is for making a list of all the libraries and tools we use in our projects. Thus having a single source to find all our tools.
Python 2Updated: 4 y ago License: Permissive (MIT)
2Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
c
Support
Quality
Security
License
Reuse
C
Corona-Analysis-and-Predictionby anuvrat29
This project is regarding corona virus analysis and prediction of number of cases in future.
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
S
Saleae-Hex-Dec-Char-to-Terminalby JaredReabow
high level analyser for converting low level analyser output to human readable data
Python 2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
i
inScanby Archieyoung
Region based insertion detection from long reads
Python 2Updated: 6 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 6 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
m
mgp_doublehitby celgene-research
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
k
kmerVCby compbio
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
C
CCMgen-scriptsby soedinglab
Contains plotting scripts, examples, and other small scripts relevant to CCMgen and the corresponding publication.
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
s
self-immunopeptidome_cancerby scottdbrown
Scripts relevant to Self-immunopeptidome and Cancer manuscript
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
X
XRSeqAnalysesby saygingulec
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
g
gdc-api-wrapperby histolab
Genomic Data Commons API wrapper
Python 2Updated: 3 y ago License: Permissive (Apache-2.0)
2Updated: 3 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
s
snakemake_rnaseqby BleekerLab
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Python 2Updated: 2 y ago License: Permissive (MIT)
2Updated: 2 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
p
ppcg-qc-from-sangerby cancerit
The tools is used to extract PPCG defined QC metrics from Sanger variant calling pipeline results.
Python 2Updated: 4 y ago License: Strong Copyleft (AGPL-3.0)
2Updated: 4 y ago License: Strong Copyleft (AGPL-3.0)Support
Quality
Security
License
Reuse
D
DeepSSVby jingmeng-bioinformatics
Detecting somatic small variants in paired tumor and normal sequencing data with convolutional neural network
Python 2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
g
gene-converterby Miserlou
Various gene identifiers -> ENSGID
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
b
bioinformatic-toolsby concinntyTurtle
bioinformatic tools related to protein contact map.
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
d
dash-bioby shday
Python 2Updated: 4 y ago License: Permissive (MIT)
2Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
V
VirusFeaturesby rjorton
Generate sequence features for viral sequences: codon, codon pair, nucleotide, dinucleotide biases
Java 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
c
covid-19-gene-convertorby steedhuang
Convert covid-19 amino acid sequence into charge sequence, and calculates complex correlations among viruses.
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
S
School-IBEby jedla97
Repository of various practice part of subjects on BUT FEKT for BPC-IBE
Java 2Updated: 3 y ago License: Permissive (MIT)
2Updated: 3 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
a
aspralignby bdslab
Algebraic Structural Pseudoknot RNA Alignment
Java 2Updated: 4 y ago License: Proprietary (Proprietary)
2Updated: 4 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
c
cluster-paired-end-tagsby cellular-genomics
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
Python 2Updated: 4 y ago License: Permissive (Apache-2.0)
2Updated: 4 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
i
interface_structure_evolutionby LeahPollet
General principles of structure and evolution of protein-protein interaction interfaces
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
m
mmcif_pdbxby Electrostatics
Yet another version of PDBx/mmCIF Python implementation
Python 2Updated: 3 y ago License: Permissive (CC0-1.0)
2Updated: 3 y ago License: Permissive (CC0-1.0)Support
Quality
Security
License
Reuse
h
hisnpperby caleblareau
Toolkit for annotating bam files with haplotype SNVs
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
s
scipipelineby BIMSBbioinfo
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data
Python 2Updated: 5 y ago License: No License (No License)
2Updated: 5 y ago License: No License (No License)Support
Quality
Security
License
Reuse
S
SARS-CoV-2by lipan6461188
The analysis scripts for SARS-CoV-2 RNA structure
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
f
Support
Quality
Security
License
Reuse
b
bioinformatics-recipesby brianjimenez
Python recipes for Bioinformatics beginners
Python 2Updated: 4 y ago License: Permissive (MIT)
2Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
B
BLOSUM62by Raha-Kheirinia
alignement de sequence ADN
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
G
GenomicsPipelineby MBaysanLab
Genomic Pipelines (Mapping + Variant Calling) from NGS Data
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
S
SeqSpawnerby tybens
An object-oriented Python library for simulating biological sequences
Python 2Updated: 3 y ago License: No License (No License)
2Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
r
roads-of-biologyby ShivamSharma13
Here are some basic python scripts working for computational problems in Biology.
Python 2Updated: 5 y ago License: No License (No License)
2Updated: 5 y ago License: No License (No License)Support
Quality
Security
License
Reuse
P
PrimerGeneratorby ginerorama
A simply tool for pick primers from a DNA sequence
Python 2Updated: 4 y ago License: No License (No License)
2Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
m
massocby ramellose
microbial associaton networks
Python 2Updated: 5 y ago License: Permissive (Apache-2.0)
2Updated: 5 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
a
auto-asmby weigelworld
snakemake long read assembly pipeline
Python 2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
2Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse