6 best Ruby Genomics libraries in 2024

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by marketing.admin@openweaver.com dot icon Updated: Feb 1, 2023

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Ruby programming language is the best language for building bioinformatics applications. Ruby programming language is flexible and dynamic nature makes it a great fit for bioinformatics and genomics projects. Ruby has been the go-to language for many bioinformaticians for decades. It's easy to use, highly expressive, and supports both object-oriented and functional programming styles. It's also a great choice for quick scripting tasks. While the last decade has seen the growth of high-performance computing in bioinformatics, the processing power available to most researchers is still limited. It is designed specifically for working with biological data, making it ideal for a wide variety of applications including machine learning, epidemiology, and systems biology. Popular Ruby Genomics open source libraries for developers include: sequenceserver - Intuitive local web frontend for the BLAST bioinformatics tool; dgidb - Rails frontend to The Genome Institute; nimbus - Ruby gem to implement Random Forest algorithms.

sequenceserverby wurmlab

JavaScript doticonstar image 251 doticonVersion:2.0.0doticon
License: Others (Non-SPDX)

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

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            sequenceserverby wurmlab

            JavaScript doticon star image 251 doticonVersion:2.0.0doticon License: Others (Non-SPDX)

            Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
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                      dgidbby dgidb

                      Ruby doticonstar image 83 doticonVersion:v2.22doticon
                      License: Permissive (MIT)

                      Rails frontend to The Genome Institute's drug gene interaction database.

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                                dgidbby dgidb

                                Ruby doticon star image 83 doticonVersion:v2.22doticon License: Permissive (MIT)

                                Rails frontend to The Genome Institute's drug gene interaction database.
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                                          idseq-webby chanzuckerberg

                                          Ruby doticonstar image 57 doticonVersion:Currentdoticon
                                          License: Permissive (MIT)

                                          Infectious Disease Sequencing Platform

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                                                    idseq-webby chanzuckerberg

                                                    Ruby doticon star image 57 doticonVersion:Currentdoticon License: Permissive (MIT)

                                                    Infectious Disease Sequencing Platform
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                                                              nimbusby xuanxu

                                                              Ruby doticonstar image 52 doticonVersion:v2.3.0doticon
                                                              License: Permissive (MIT)

                                                              Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context

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                                                                        nimbusby xuanxu

                                                                        Ruby doticon star image 52 doticonVersion:v2.3.0doticon License: Permissive (MIT)

                                                                        Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context
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                                                                                  single_cell_portal_coreby broadinstitute

                                                                                  Ruby doticonstar image 56 doticonVersion:1.45.0doticon
                                                                                  License: Permissive (BSD-3-Clause)

                                                                                  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

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                                                                                            single_cell_portal_coreby broadinstitute

                                                                                            Ruby doticon star image 56 doticonVersion:1.45.0doticon License: Permissive (BSD-3-Clause)

                                                                                            Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
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                                                                                                      migaby bio-miga

                                                                                                      Ruby doticonstar image 27 doticonVersion:v1.3.2.0doticon
                                                                                                      License: Weak Copyleft (Artistic-2.0)

                                                                                                      MiGA: Microbial Genomes Atlas

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                                                                                                                migaby bio-miga

                                                                                                                Ruby doticon star image 27 doticonVersion:v1.3.2.0doticon License: Weak Copyleft (Artistic-2.0)

                                                                                                                MiGA: Microbial Genomes Atlas
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