Pharma and Life Sciences Libraries - Page 3

DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts

Python 39Updated: 3 y ago License: Permissive (Apache-2.0)

Skin lesion detection from dermoscopic images using Convolutional Neural Networks

Python 39Updated: 3 y ago License: No License (No License)

Backend server for Genome Nexus

Java 39Updated: 1 y ago License: Permissive (MIT)

Decrypting somatic mutation patterns to reveal the evolution of cancer

Python 39Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

Homebridge plugin for Awair

JavaScript 39Updated: 3 y ago License: Permissive (MIT)

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

Python 38Updated: 11 mo ago License: Permissive (BSD-2-Clause)

Deep-Learning for Tidemark Segmentation in Human Osteochondral Tissues Imaged with Micro-computed Tomography

Python 38Updated: 3 y ago License: Permissive (MIT)

Physical validation of molecular simulations

Python 38Updated: 1 y ago License: Permissive (MIT)

Burden testing against public controls

Python 38Updated: 1 y ago License: Permissive (MIT)

Medkey Hospital Information System main repository: Practice Management for Practicioners & Hospitals, EHR, Patient Engagement

PHP 38Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

Snakemake-based workflow for detecting structural variants in WGS data

Python 37Updated: 2 y ago License: Permissive (Apache-2.0)

Decentralized distributed database of genomic and clinical data.

Python 37Updated: 4 y ago License: Permissive (Apache-2.0)

Recombination Landscape Estimation using Recurrent Neural Networks

Python 37Updated: 1 y ago License: Permissive (MIT)

Interpretation of proteomics identification results

Java 37Updated: 1 y ago License: No License (No License)

Molecular Generation for Desired Transcriptome Changes with Adversarial Autoencoders

Python 36Updated: 3 y ago License: Permissive (MIT)

(Incubation) Streams Healthcare Analytics Platform - To enable and inspire the next generation healthcare solutions

Java 36Updated: 3 y ago License: Permissive (Apache-2.0)

Patient registration and outpatient diagnosis system to be used with OpenMRS

Ruby 36Updated: 4 y ago License: No License (No License)

A webpack plugin that wraps your bundle in a System.register

JavaScript 36Updated: 4 y ago License: Permissive (Apache-2.0)

Cloud-based single-cell copy-number variation analysis tool

PHP 36Updated: 3 y ago License: Permissive (BSD-2-Clause)

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

Python 35Updated: 3 y ago License: Permissive (BSD-3-Clause)

CADD scripts release for offline scoring. For more information about CADD, please visit our website

Python 35Updated: 3 y ago License: Proprietary (Proprietary)

Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

Python 35Updated: 1 y ago License: Permissive (BSD-2-Clause)

A+ forms. Would use again

JavaScript 35Updated: 3 y ago License: No License (No License)

Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge

Python 35Updated: 3 y ago License: Proprietary (Proprietary)

📦 Biip interprets the data in barcodes.

Python 34Updated: 1 y ago License: Permissive (Apache-2.0)

a python module for generating protein contact maps and distance maps

Python 34Updated: 3 y ago License: Proprietary (Proprietary)

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

Java 34Updated: 1 y ago License: Strong Copyleft (AGPL-3.0)

:hibiscus: lightweight transcriptome assembly for short reads and nanopore reads

Java 34Updated: 3 y ago License: Proprietary (Proprietary)

Biomedical Visualization and Analysis Framework

Python 34Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

dcHiC: Differential compartment analysis for Hi-C datasets

R 34Updated: 1 y ago License: Permissive (MIT)

GeneValidator: Identify problems with predicted genes

Ruby 34Updated: 3 y ago License: Strong Copyleft (AGPL-3.0)

Htmlwidgets binding R commands to the BioCircos.js library

JavaScript 34Updated: 3 y ago License: Strong Copyleft (GPL-2.0)

Clinical interpretation of somatic mutations in cancer

Python 34Updated: 1 y ago License: No License (No License)

TGS scaffolding

Java 33Updated: 3 y ago License: No License (No License)

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity

Python 33Updated: 3 y ago License: Strong Copyleft (GPL-2.0)

NGSEP is an integrated framework for analysis of high throughput sequencing (HTS) reads. The main functionality of NGSEP is the variants detector, which allows to make integrated discovery and genotyping of Single Nucleotide Variants (SNVs), insertions, deletions, and genomic regions with copy number variation (CNVs).

Java 33Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

Jupyter Notebook 33Updated: 10 mo ago License: Permissive (CC0-1.0)

Eyes on your (genomic) data

JavaScript 33Updated: 2 y ago License: Proprietary (Proprietary)

Medical device simulator for training healthcare professionals.

C# 33Updated: 11 mo ago License: Proprietary (Proprietary)

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Python 32Updated: 3 y ago License: Permissive (BSD-3-Clause)

Kaggle 2018 @ Human Protein Atlas Image Classification

Python 32Updated: 3 y ago License: Permissive (Apache-2.0)

Anonymized dataset of COVID-19 cases with a focus on radiological imaging. This includes images (x-ray / ct) with extensive metadata, such as admission-, ICU-, laboratory-, and patient master-data.

Python 32Updated: 3 y ago License: Proprietary (Proprietary)

Kidney Tumor Segmentation Challenge 2019: MIScnn - 3D Residual U-Net

Python 32Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

A python parser to simplify and build the VCF (Variant Call Format).

Python 32Updated: 3 y ago License: Permissive (MIT)

A Python implementation of divisive and hierarchical clustering algorithms. The algorithms were tested on the Human Gene DNA Sequence dataset and dendrograms were plotted.

Python 32Updated: 3 y ago License: No License (No License)

An Artificial Neural Network-based discriminator for validating clinically significant genomic variants

Python 32Updated: 3 y ago License: Proprietary (Proprietary)

Powerful mechanism to sort arrays or array of objects by one or more properties. You can also specify a custom comparer function.

JavaScript 32Updated: 3 y ago License: Permissive (ISC)

Custom extension script for whistle

JavaScript 32Updated: 3 y ago License: Permissive (MIT)

The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.

JavaScript 32Updated: 2 y ago License: No License (No License)

HiGHmed Data Sharing Framework

Java 32Updated: 1 y ago License: Permissive (Apache-2.0)