Easy to use relay mock and unit testing tool (works with Jest & Enzyme)
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clinical-document-library-dotnetby AuDigitalHealth
C# 
13 Version:Current License: Proprietary (Proprietary)
The Clinical Document Library simplifies the development process by providing vendors with a sample implementation of how to create clinical documents. The library supports all Agency-specified document types, as published on the Agency website.
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A suite of unique bioinformatics tools for the brave explorer.
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PyTorch implementation of Episodic Meta Reinforcement Learning on variants of the "Two-Step" task. Reproduces the results found in three papers. Check the ReadMe for more details!
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Deep Learning Based Tumor Type Classification Using Gene Expression Data
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Initial data release for drug-target interactions of the cancer targetome.
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A programming language inspired by genomics
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PyPI package for traversing extremely large FTP directory trees
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JSON-LD Contexts for Bioinformatics Data
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Python wrapper for Circos
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Genome Contact Map Explorer - gcMapExplorer. Visit:
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Submission for HackJaipur Hackathon 2020. Website: http://coronaxiv2.surge.sh/#/
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Novel Adjacency Identification with Barcoded Reads
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A toolkit to validate and consolidate antimicrobial resistance gene databases
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Subclassification of disease states based on the intersection of literature and expression
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A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
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A complete health care app with elegant GUI and following features : customized Medicine Reminder, daily health tips, information about nearby hospitals with navigation, complete information regarding a medicine or salt and first aid tips. First aid tips are fetched from remote database with 'save offline' feature for emergency.
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Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
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Multisample Variant Format ToolKit
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Cost-efficient genome-wide gene expression profiling
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RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
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Sequence-database-curatorby Eslam-Samir-Ragab
Python 12 Version:Current License: Strong Copyleft (GPL-3.0)
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
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NGSphy: phylogenomic simulation of next-generation sequencing data
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Harmonizing pathway databases using Biological Expression Language (BEL)
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Python library for the Pimoroni MAX30105 breakout
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Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
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Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
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2019WAIC-hackthon-Garbage-Classificationby 17Skye17
Python 12 Version:Current
License: No License (No License)
License: No License (No License)1st Place Solution to 2019WAIC hackthon Garbage Classification Challenge
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Desktop tool for microbial genome annotation and gene detection
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Medical-Healthcare-3D-Imaging-AIby DeepHiveMind
Python 12 Version:Current License: Permissive (BSD-3-Clause)
:hospital: :eye_speech_bubble: Medical Healthcare AI | Robotic Surgery | Automated Brain Tumour Segmentation | Skin Cancer Lesion Detection & Segmentation (Melonama Recognition) | Lung Cancer detection (Chest CT Scan) | IMAGE SEGMENTATION TECHNIQUES
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A suite of javascript apps for visualizing sequencing data
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CoECI-CMS-Healthcare-Fraud-Preventionby NASA-Tournament-Lab
JavaScript 12 Version:Current License: Permissive (Apache-2.0)
The Healthcare Fraud Prevention Partnership (HFPP) through United States Centers for Medicare & Medicaid Services (CMS) in collaboration with NASA’s Center of Excellence for Collaboration (CoECI), Harvard, and TopCoder developed software that supports a data exchange network that enables healthcare insurance-paying entities in both the public and private sector to safely and securely share information for purposes of prevention and detection of fraud, waste and abuse across partners.
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Lollipop-diagram to visualize genomic mutations
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GraphQL based Resource Server based on HL7 FHIR version R4
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Covid 19 api
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The platform for verified medical speakers and their recommendations.
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MRI-based Deep Learning Segmentation and Radiomics of Sarcoma Tumors in Mice
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An automated advocate for patient rights
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Free Open Source Components for Xamarin Forms
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Code for the paper Uncertainty Quantification using Variational Inference for Biomedical Image Segmentation
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This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
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GenNotes – public consensus annotation of genetic variants
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ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
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Genomon pipeline in 2015
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Pipelines for NGS data preprocessing by the Bock lab and friends
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relay-testing-utilsby meuschke
Easy to use relay mock and unit testing tool (works with Jest & Enzyme)
JavaScript 13Updated: 6 y ago License: Permissive (MIT)
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aws-amplify-connectby aws-samples
AWS Amplify Agent/Management portal and Amazon Connect dialer
JavaScript 13Updated: 3 y ago License: Proprietary (Proprietary)
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c
clinical-document-library-dotnetby AuDigitalHealth
The Clinical Document Library simplifies the development process by providing vendors with a sample implementation of how to create clinical documents. The library supports all Agency-specified document types, as published on the Agency website.
C# 13Updated: 4 y ago License: Proprietary (Proprietary)
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BLSSby Binomica-Labs
A suite of unique bioinformatics tools for the brave explorer.
C# 13Updated: 4 y ago License: Permissive (MIT)
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NBIA-TCIAby CBIIT
Java 13Updated: 2 y ago License: Proprietary (Proprietary)
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Meta-RL-TwoStep-Taskby BKHMSI
PyTorch implementation of Episodic Meta Reinforcement Learning on variants of the "Two-Step" task. Reproduces the results found in three papers. Check the ReadMe for more details!
Python 13Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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DL-based-Tumor-Classificationby HHHit
Deep Learning Based Tumor Type Classification Using Gene Expression Data
Python 13Updated: 4 y ago License: Permissive (MIT)
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The-Cancer-Targetomeby ablucher
Initial data release for drug-target interactions of the cancer targetome.
Java 12Updated: 4 y ago License: No License (No License)
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genomyby nishio
A programming language inspired by genomics
Python 12Updated: 6 y ago License: No License (No License)
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FTPwalkerby Bohdan-Khomtchouk
PyPI package for traversing extremely large FTP directory trees
Python 12Updated: 5 y ago License: No License (No License)
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biocontextby prefixcommons
JSON-LD Contexts for Bioinformatics Data
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pyrcosby biosustain
Python wrapper for Circos
Python 12Updated: 5 y ago License: Strong Copyleft (GPL-3.0)
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gcMapExplorerby rjdkmr
Genome Contact Map Explorer - gcMapExplorer. Visit:
Python 12Updated: 5 y ago License: Strong Copyleft (GPL-3.0)
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CoronaXivby arghyadeep99
Submission for HackJaipur Hackathon 2020. Website: http://coronaxiv2.surge.sh/#/
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NAIBRby raphael-group
Novel Adjacency Identification with Barcoded Reads
Python 12Updated: 5 y ago License: Permissive (MIT)
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MAMMO_Retinanetby hwejin23
Python 12Updated: 5 y ago License: Permissive (Apache-2.0)
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ARGDITby phglab
A toolkit to validate and consolidate antimicrobial resistance gene databases
Python 12Updated: 5 y ago License: Permissive (MIT)
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phenotypeXpressionby NCBI-Hackathons
Subclassification of disease states based on the intersection of literature and expression
Python 12Updated: 5 y ago License: Permissive (MIT)
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santa-simby santa-dev
A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
Java 12Updated: 4 y ago License: Permissive (Apache-2.0)
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CareForUby rishab951
A complete health care app with elegant GUI and following features : customized Medicine Reminder, daily health tips, information about nearby hospitals with navigation, complete information regarding a medicine or salt and first aid tips. First aid tips are fetched from remote database with 'save offline' feature for emergency.
Java 12Updated: 4 y ago License: No License (No License)
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adamajavaby AdamaJava
Java 12Updated: 3 y ago License: Proprietary (Proprietary)
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MiCallby cfe-lab
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
Python 12Updated: 3 y ago License: Strong Copyleft (AGPL-3.0)
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mvftoolsby jbpease
Multisample Variant Format ToolKit
Python 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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tag-based_RNAseqby z0on
Cost-efficient genome-wide gene expression profiling
Python 12Updated: 2 y ago License: No License (No License)
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r
rnaseq-pipelineby PavlidisLab
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Python 12Updated: 3 y ago License: Permissive (Unlicense)
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Sequence-database-curatorby Eslam-Samir-Ragab
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Python 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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ngsphyby merlyescalona
NGSphy: phylogenomic simulation of next-generation sequencing data
Python 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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PathMeby PathwayMerger
Harmonizing pathway databases using Biological Expression Language (BEL)
Python 12Updated: 4 y ago License: Permissive (Apache-2.0)
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max30105-pythonby pimoroni
Python library for the Pimoroni MAX30105 breakout
Python 12Updated: 4 y ago License: Permissive (MIT)
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Jovianby DennisSchmitz
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Python 12Updated: 4 y ago License: Strong Copyleft (AGPL-3.0)
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PEGASASby Xinglab
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Python 12Updated: 4 y ago License: No License (No License)
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2019WAIC-hackthon-Garbage-Classificationby 17Skye17
1st Place Solution to 2019WAIC hackthon Garbage Classification Challenge
Python 12Updated: 4 y ago License: No License (No License)
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pathogenieby dmnfarrell
Desktop tool for microbial genome annotation and gene detection
Jupyter Notebook 12Updated: 2 y ago License: Strong Copyleft (GPL-3.0)
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Medical-Healthcare-3D-Imaging-AIby DeepHiveMind
:hospital: :eye_speech_bubble: Medical Healthcare AI | Robotic Surgery | Automated Brain Tumour Segmentation | Skin Cancer Lesion Detection & Segmentation (Melonama Recognition) | Lung Cancer detection (Chest CT Scan) | IMAGE SEGMENTATION TECHNIQUES
Python 12Updated: 4 y ago License: Permissive (BSD-3-Clause)
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seekerby damiankao
A suite of javascript apps for visualizing sequencing data
JavaScript 12Updated: 4 y ago License: No License (No License)
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CoECI-CMS-Healthcare-Fraud-Preventionby NASA-Tournament-Lab
The Healthcare Fraud Prevention Partnership (HFPP) through United States Centers for Medicare & Medicaid Services (CMS) in collaboration with NASA’s Center of Excellence for Collaboration (CoECI), Harvard, and TopCoder developed software that supports a data exchange network that enables healthcare insurance-paying entities in both the public and private sector to safely and securely share information for purposes of prevention and detection of fraud, waste and abuse across partners.
JavaScript 12Updated: 5 y ago License: Permissive (Apache-2.0)
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g3lollipop.jsby G3viz
Lollipop-diagram to visualize genomic mutations
JavaScript 12Updated: 4 y ago License: Permissive (MIT)
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intromat-fhirby sureshHARDIYA
GraphQL based Resource Server based on HL7 FHIR version R4
JavaScript 12Updated: 4 y ago License: Permissive (MIT)
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dokazovi-beby ita-social-projects
The platform for verified medical speakers and their recommendations.
Java 12Updated: 3 y ago License: Permissive (MIT)
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MRI_Segmentation_Radiomicsby mdholbrook
MRI-based Deep Learning Segmentation and Radiomics of Sarcoma Tumors in Mice
Python 12Updated: 3 y ago License: Permissive (Apache-2.0)
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vocatusby codeforamerica
An automated advocate for patient rights
PHP 12Updated: 4 y ago License: Permissive (Apache-2.0)
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ManneDoFormsby Manne990
Free Open Source Components for Xamarin Forms
C# 12Updated: 5 y ago License: Permissive (MIT)
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uqviby abhinavsagar
Code for the paper Uncertainty Quantification using Variational Inference for Biomedical Image Segmentation
Python 12Updated: 4 y ago License: Permissive (MIT)
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LKS-Datasetby cradleai
This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
Python 12Updated: 2 y ago License: No License (No License)
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gennotesby OpenHumans
GenNotes – public consensus annotation of genetic variants
Python 11Updated: 6 y ago License: Permissive (MIT)
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immunedbby arosenfeld
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Python 11Updated: 4 y ago License: Proprietary (Proprietary)
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GenomonPipelineby Genomon-Project
Genomon pipeline in 2015
Python 11Updated: 5 y ago License: Proprietary (Proprietary)
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open_pipelinesby epigen
Pipelines for NGS data preprocessing by the Bock lab and friends
Python 11Updated: 4 y ago License: No License (No License)
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KGGseqby limx54
Java 11Updated: 4 y ago License: No License (No License)
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