Jovian | viromics pipeline that focuses on automation | Continuous Deployment library

by DennisSchmitz Python Version: v1.2.07 License: AGPL-3.0

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | Jovian Summary

Jovian is a Python library typically used in Healthcare, Pharma, Life Sciences, Devops, Continuous Deployment applications. Jovian has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However Jovian build file is not available. You can download it from GitHub.

Jovian is a Public Health toolkit to automatically process raw NGS data from human clinical matrices (faeces, serum, etc.) into clinically relevant information. It has three main components:.

Support

Quality

Security

License

Reuse

Support

Jovian has a low active ecosystem.

It has 12 star(s) with 5 fork(s). There are 10 watchers for this library.

It had no major release in the last 12 months.

There are 19 open issues and 88 have been closed. On average issues are closed in 135 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of Jovian is v1.2.07

Quality

Jovian has no bugs reported.

Security

Jovian has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

Jovian is licensed under the AGPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

Jovian releases are available to install and integrate.

Jovian has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed Jovian and discovered the below as its top functions. This is intended to give you an instant insight into Jovian implemented functionality, and help decide if they suit your requirements.

Generates heatmaps for the given taxonomic rankmap
Builds the cons for a given pileupindex
Returns a list of codons that are beyond the current sequence
List inserts in a pileupindex
Check if a given location is inside an ORF
Extracts inserts from a pileup column
Parse command line arguments
Cut reads
Retrieve coordinates of primers from a primer file
Returns a list of coordinates from start to end
Returns a list of coordinates in reverse order
Draw stacked bars
Cut reads from fastq
Check the number of numbers in the dataframe
Sum the number of reads mapped to superkingdom
Get the coordinates of the primer coordinates
Count the number of non - human readable reads in a fastq file
Read the taxonomic classifications
Indexes a fastqfile into a dictionary
Report the taxonomic statistics
Build a pandas index from a fasta file
List insertion positions in a pileupindex
Summarize unclassified reads
Remove a subset of taxon
Filter a pandas DataFrame by taxon
Reads the number of read pairs from a csv file
Builds the coverage report

Get all kandi verified functions for this library.

Jovian Key Features

No Key Features are available at this moment for Jovian.

Jovian Examples and Code Snippets

No Code Snippets are available at this moment for Jovian.

Community Discussions

Trending Discussions on Jovian

Updating packages in conda

What is the overall life expectancy across in the world? (with numpy )

why is dimension with matplotlib giving an error

How to convert a string of pixels into an image with python?

java program planet using enums

Displaying content when user clicks on an option in a simple drop down javascript menu

QUESTION

Updating packages in conda

Asked 2021-Apr-14 at 20:26

I have a problem with updating packages in conda. The list of my installed packages is:

...

ANSWER

Answered 2021-Apr-14 at 20:26

Channel pypi means that the package was installed with pip. You may need to upgrade it with pip as well

Source https://stackoverflow.com/questions/67097308

QUESTION

What is the overall life expectancy across in the world? (with numpy )

Asked 2020-Nov-08 at 18:51

https://hub.jovian.ml/wp-content/uploads/2020/09/countries.csv

I am using the above data for practicing pandas and NumPy methods.

I want to find overall life expectancy for that I am using the average function of NumPy

...

ANSWER

Answered 2020-Nov-08 at 18:51

You need to remove empty values before doing average:

Source https://stackoverflow.com/questions/64713200

QUESTION

why is dimension with matplotlib giving an error

Asked 2020-Jul-15 at 06:50

...

ANSWER

Answered 2020-Jul-15 at 06:50

I think the problem is that you have a 3D array you want to plot but you need 2D. Try to use np.reshape() to change you shape to 1024x1024

Source https://stackoverflow.com/questions/62908424

QUESTION

How to convert a string of pixels into an image with python?

Asked 2020-Jun-28 at 12:04

I am having a string of pixels of a B/W image in this manner:-

...

ANSWER

Answered 2020-Jun-28 at 08:26

You can use PIL.Image.frombuffer() function for example.

Source https://stackoverflow.com/questions/62619586

QUESTION

java program planet using enums

Asked 2020-Feb-10 at 13:35

i have an enum called planets and it has 2 fields: how many moons are in a planet (int) and if the planet is Terrestrial or Jovian (boolean). Then i have program called planet info which list each planet type by Iterate through each planet to determine type. But i cant seem to figure out how to check if it is a Terrestrial or Jovian.

Heres a sample output :

...

ANSWER

Answered 2020-Feb-07 at 06:35

Add a static function to your enum, call it getPlanetByName(String name). The function should iterate through Planet.values() and return the one with the specified name. Then, as soon as your user enters a planetName, you store it into

Source https://stackoverflow.com/questions/60108097

QUESTION

Displaying content when user clicks on an option in a simple drop down javascript menu

Asked 2017-Apr-20 at 22:12

I have a basic little drop down menu that I'm trying to make where I need to display all of the planets in the first dropdown menu and with "Galaxies" being the last option, where, when you click on it, creates a second dropdown menu listing a few galaxies to select. I need to create separate functions that will display a tidbit about whatever option the user picks but I'm not sure how to go about doing it? I was thinking, for the planets, for example about creating an array of those planets then using a loop to try and determine what the user picked using document.getElementById() but then how do I output the content that needs to be assigned to that option? (The tidbits are also kept in an array as well).

...

ANSWER

Answered 2017-Apr-20 at 22:11

If you create your planet descriptions as a hash, you can get the value easily.

Source https://stackoverflow.com/questions/43530652

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Jovian

:memo: Please refer to our documentation for detailed instructions regarding the installation of Jovian here.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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