maf2fasta | generate fasta from maf files

maf2fasta is a C++ library. maf2fasta has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

rsync -avz --progress rsync://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/maf ./. for i in *.md5;do md5sum -c $i;done. cd maf mkdir used for i in ls chr*.maf.gz|grep -v chrUn|grep -v random|grep -v hap;do newname=basename $i .gz; gunzip -c $i > used/$newname;done. #program is hardcore as hell, so only start 2 processes, that might even be to much ls maf/used/*.maf|xargs -P 2 -n1 -I infile sh -c './a.out infile |gzip -c >maf/info/basename infile.info.gz'.