artic | The AlteRnaTive Impala Compiler | Compiler library

by AnyDSL C++ Version: ipdps23 License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | artic Summary

artic is a C++ library typically used in Utilities, Compiler applications. artic has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

The AlteRnaTive Impala Compiler.

Support

Quality

Security

License

Reuse

Support

artic has a low active ecosystem.

It has 21 star(s) with 6 fork(s). There are 30 watchers for this library.

It had no major release in the last 6 months.

There are 3 open issues and 4 have been closed. On average issues are closed in 61 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of artic is ipdps23

Quality

artic has no bugs reported.

Security

artic has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

artic is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

artic releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of artic

Get all kandi verified functions for this library.

artic Key Features

No Key Features are available at this moment for artic.

artic Examples and Code Snippets

No Code Snippets are available at this moment for artic.

Community Discussions

Trending Discussions on artic

how can I pass table or dataframe instead of text with entity recognition using spacy

java.lang.IllegalStateException: function = , count = 4, index = 4

ValueError: nlp.add_pipe now takes the string name of the registered component factory, not a callable component

snakemake - define input for aggregate rule without wildcards

Laravel does not see a Model

Put Method In Express Giving Empty Array

shell script execute python code as shell script

Will the context of Service() cause "This field leaks a context object"?

How to add new variables into objects to use in classes

Azure AD Connect Cloud password issue

QUESTION

how can I pass table or dataframe instead of text with entity recognition using spacy

Asked 2021-Jun-15 at 09:55

The following link shows how to add multiple EntityRuler with spaCy. The code to do that is below:

...

ANSWER

Answered 2021-Jun-15 at 09:55

Imagine that your dataframe is

Source https://stackoverflow.com/questions/67983109

QUESTION

java.lang.IllegalStateException: function = , count = 4, index = 4

Asked 2021-Jun-11 at 14:59

I am getting this error when I build the project

...

ANSWER

Answered 2021-May-20 at 10:26

Update all compose libraries to beta07:

Source https://stackoverflow.com/questions/67617728

QUESTION

ValueError: nlp.add_pipe now takes the string name of the registered component factory, not a callable component

Asked 2021-Jun-10 at 07:41

The following link shows how to add custom entity rule where the entities span more than one token. The code to do that is below:

...

ANSWER

Answered 2021-Jun-09 at 17:49

You need to define your own method to instantiate the entity ruler:

Source https://stackoverflow.com/questions/67906945

QUESTION

snakemake - define input for aggregate rule without wildcards

Asked 2021-Jun-08 at 15:40

I am writing a snakemake to produce Sars-Cov-2 variants from Nanopore sequencing. The pipeline that I am writing is based on the artic network, so I am using artic guppyplex and artic minion.

The snakemake that I wrote has the following steps:

zip all the fastq files for all barcodes (rule zipFq)
perform read filtering with guppyplex (rule guppyplex)
call the artic minion pipeline (rule minion)
move the stderr and stdout from qsub to a folder under the working directory (rule mvQsubLogs)

Below is the snakemake that I wrote so far, which works

...

ANSWER

Answered 2021-Jun-08 at 15:40

The rule that fails is rule guppyplex, which looks for an input in the form of {FASTQ_PATH}/{{barcode}}.

Looks like the wildcard {barcode} is filled with barcode49/barcode49.consensus.fasta, which happened because of two reasons I think:

First (and most important): The workflow does not find a better way to produce the final output. In rule catFasta, you give an input file which is never described as an output in your workflow. The rule minion has the directory as an output, but not the file, and it is not perfectly clear for the workflow where to produce this input file.

It therefore infers that the {barcode} wildcard somehow has to contain this .consensus.fasta that it has never seen before. This wildcard is then handed over to the top, where the workflow crashes since it cannot find a matching input file.

Second: This initialisation of the wildcard with sth. you don't want is only possible since you did not constrain the wildcard properly. You can for example forbid the wildcard to contain a . (see wildcard_constraints here)

However, the main problem is that catFasta does not find the desired input. I'd suggest changing the output of minion to "nanopolish/{barcode}/{barcode}.consensus.fasta", since the you already take the OUTDIR from the params, that should not hurt your rule here.

Edit: Dummy test example:

Source https://stackoverflow.com/questions/67805295

QUESTION

Laravel does not see a Model

Asked 2021-May-02 at 11:59

I'm new in Laravel. I am using Laravel Version 8.5.

I am facing a problem and have no idea how to fix it. When i trying to transfer data from DB,Laravel does not see Modul "Article".

Getting below error : Class 'App\Http\Controllers\Article' not found in line $articles = Article::all();

Can you help me please. Thanks!

...

ANSWER

Answered 2021-Apr-30 at 16:05

Inside your ArticlesController

You need to add use statement for Article

as below:

//ArticlesController

Source https://stackoverflow.com/questions/67337040

QUESTION

Put Method In Express Giving Empty Array

Asked 2021-Apr-18 at 08:24

**SO when I am creating a simple REST API and I am using res.route and in it I am doing a get request and a put request but when i trigger put request it does not do anything and POSTMAN just give a empty string i am using mongodb as database and mongoose enter code here **

...

ANSWER

Answered 2021-Apr-18 at 08:24

You are using {overwrite: true}, and The MongoDB server disallows overwriting documents using updateOne FYI. So, from the Documentation, if you use overwrite: true, you should use replaceOne()

Source https://stackoverflow.com/questions/67141121

QUESTION

shell script execute python code as shell script

Asked 2021-Apr-12 at 03:56

I would like to execute hello.py using test.sh. However, it seems test.sh read hello.py as sh file.

error message

...

ANSWER

Answered 2021-Apr-12 at 00:45

You should mention the python path

Source https://stackoverflow.com/questions/67051423

QUESTION

Will the context of Service() cause "This field leaks a context object"?

Asked 2021-Mar-16 at 08:02

I have read the articals

This Field leaks context object

This field leaks a context object

Getting a "this field leaks a context object" when passing a context from Main Activity to Java Class via Constructor

The Code private var mService: RecordService? = null show a warning "This field leaks a context object" ? why?

I think that HomeViewModel object will be destroyed after Activity object destroyed, and the mService will be released too, why does Android Studio display "This field leaks a context object" ?

...

ANSWER

Answered 2021-Mar-16 at 03:48

From the Official docs:

A ViewModel must never reference a view, Lifecycle, or any class that may hold a reference to the activity context.

Since the services have their own lifecycle and are managed by Operating Systems, you shouldn't keep its reference inside the ViewModel.

During configuration change, the ViewModel is preserved, so still may have reference to Service and will cause the memory leak.

Source https://stackoverflow.com/questions/66648361

QUESTION

How to add new variables into objects to use in classes

Asked 2021-Mar-03 at 07:15

I have the code:

...

ANSWER

Answered 2021-Mar-03 at 07:15

import time
class Tune:
    def __init__(self, title, artist, duration):
        self.title = title
        self.artist = artist
        self.duration = duration
        
class Play:

    def __init__(self):
        self.tracks = []

    def add(self, song):
        self.tracks.append(song)

    def delete(self, number):
        self.tracks.pop(number-1)

    def look(self):
        for i in range(len(self.tracks)):
            print(f"{i+1} -{self.tracks[i].artist} - {self.tracks[i].title}")

    def duration(self):
        s = 0
        for y in range(len(self.tracks)):
            s += int(self.tracks[y].duration)
        
        print(time.strftime('%H:%M:%S', time.gmtime(s)))


n = int(input("Enter the number of tracks to add"))
playlist = Play()

for i in range(n):
    title, artist, duration = input("Enter the title, artist, and duration of a track").split(',')
    song = Tune(title, artist, duration)
    playlist.add(song)


playlist.look()
playlist.duration()
print("After Deleting 2nd....")
playlist.delete (2)
playlist.look()
print("After Deleting 2nd....")
playlist.delete (2)
playlist.look()

Source https://stackoverflow.com/questions/66450908

QUESTION

Azure AD Connect Cloud password issue

Asked 2021-Feb-09 at 20:40

I have setup Azure AD Connect Cloud. The new product from MS Azure and I am getting green lights across the board that the system is functioning properly. But on-prem password is not working

Cloud Sync for my domain has a Healthy Status
When creating a User or syncing an already existing user from my Test OU. They show up in AzureAD
I am able to add license to either user.
I have port 80, 443, 8080 all open for outbound connections from my server
I have open inbound traffic from the firewall for both *.msappproxy.net and *.servicebus.windows.net from any port to port 443 and 80 to the server

When I try to log into https://myapps.microsoft.com as described in the MS Artical. I receive the following error. "Your account or password is incorrect. If you don't remember your password. reset it now"

Has anyone see this before?

...

ANSWER

Answered 2021-Feb-09 at 20:40

I figured out the issue with Azure AD connect cloud not syncing password hash. The issue was the admin account I was using did not have the proper rights to the domain. Once changed I was able to sync hash with no issue.

Steps to resolve this issue. Open Active Directory Users and Computers Right Click on the root of your domain Testsystem.local Click on Properties Click on Security Tab Add in the Username you used during installation for "Azure AD Connect Cloud" for local authentication" Under Permisssions Check "Allow" for Replicating Directory Changes & Replicating Directory Changes All

After that your system should allow Password Hash to sync. (or it did for me atleast)

Source https://stackoverflow.com/questions/65996897

Community Discussions, Code Snippets contain sources that include Stack Exchange Network