straw | Extract data quickly from Juicebox via straw | Data Manipulation library
kandi X-RAY | straw Summary
kandi X-RAY | straw Summary
Straw is a fast implementation of reading/dump for .hic files. Available in C++, R, and Python. There are two Python versions - a pure Python one and a version where the C++ code is bound with pybind11. The latter is much faster. A Jupyter notebook example can be found here:
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of straw
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QUESTION
I'm try to loop 2 query inside one table . both query had 10 records . so i put my first foreach (or looping) before TR tag ..
here is example of the table that i want to create :
...ANSWER
Answered 2021-May-28 at 04:15Yep, your logic is missing something because the second loop is running within the first loop, so you're creating a lot of TDs within the same TR.
In order to achieve what you want, I suggest merging the two arrays, then looping a single array.
QUESTION
The intent: Refactor my code into MVC (this is just the model/database part), and have the server create the database with tables on first run if the database or tables does not exist.
This works when using a "flat" file with all the classes and functions defined in that file, but after moving out the functions into a service class and the models into their own folder with model classes, the db.create_all()
function does not seem to be able to detect the table class correctly any more.
Example structure, (minimum viable problem):
server.py
...ANSWER
Answered 2021-Apr-25 at 15:35The problem is that server.py
is executed twice
- when it's imported in
models/users.py
- when
server.py
is called to run the app
Each execution generates a new db
instance. The db
imported by the model file adds the models to its metadata
, the db
created when the app is run has empty metadata.
You can confirm this by printing id(db)
and db.metadata.tables
at the end of models/users.py
and just before the call to db.create_all()
in the main
function.
You need to structure your code so that only one db
gets created. For example, you could move the app configuration and creation code into its own module, mkapp.py
(feel free to come up with a better name):
mkapp.py
QUESTION
I'm trying to make a Java program where it calculates the total price of 3 differently valued items. Currently I'm trying to figure out why it won't let me multiply together a preset price and the amount inputted. Sorry for sloppy coding, I don't know Java basically at all. Here is code:
...ANSWER
Answered 2021-Apr-21 at 00:26cup is a double type, so if you multiply a double with int you will always have a double value. Just change cupprice to double and everything will works fine
change line 10 to double cupprice;
QUESTION
How to train on a dataset which has each label of shape [5,30]. For example :
...ANSWER
Answered 2021-Apr-19 at 12:19If you do consider that the output needs to be in this shape (and not flattened), the easiest (and also correct solution in my opinion) is to have a multi-output network, each output having a layers.Dense(30,activation='softmax')
.
You would have something like:
QUESTION
I have a very large spreadsheet with headers (180k+ rows) with unique ID's in A, start date in B, and end date in C. There are multiple rows per ID and the start and end dates overlap in a messy way.
I need to find any gaps in the date ranges for each ID. I've written a few different formulas and macro's, tried and tweaked other VBA scripts I've found here and elsewhere. I've attempted a power query and power pivot grasping at straws, but if excel doesn't crash I'm not getting a usable output.
Here is an example of the data I have:
ID start end 100 1/1/2015 3/1/2015 100 3/1/2015 1/1/2300 100 1/1/2018 1/1/2019 096 7/1/2020 1/1/2021 182 9/17/2017 1/1/2018 182 1/1/2018 1/1/2019 607 1/1/2015 9/1/2015 607 9/1/2015 1/1/2017 607 1/1/2018 1/1/2020 607 1/1/2021 1/1/2300I would like to run a script that combines or consolidates these in someway to remove extra lines for the ID's that do not have any gaps in the date range, but will leave an extra row for the ID's that do:
ID start end 100 1/1/2015 1/1/2300 096 7/1/2020 1/1/2021 182 9/17/2017 1/1/2019 607 1/1/2015 1/1/2017 607 1/1/2018 1/1/2020 607 1/1/2021 1/1/2300I don't need it to combine; though, for presentations sake it would be nice. Also, I would settle for something that is able to tell me which ID's have a gap in the range, even if it doesn't combine the dates or remove extra rows.
Newish to VBA and formulas, though this is the first instance I've been unable to get a desired output. Any help or pointing out a better way to approach this would be greatly appreciated.
I did find a script from another site that almost did the job, though because the date ranges cant all be sorted in proper order, like ID 100 in the example, it creates an extra line when it shouldn't. I'll paste that below.
...ANSWER
Answered 2021-Apr-17 at 03:25Try this. Make sure that the data range is sorted by id and start date before you begin.
QUESTION
I'm currently struggling with figuring out what's wrong with a Event insert I'm trying to accomplish in Flutter using Google Calendar V3 API. Initially I thought it's a matter of RFC3339 vs ISO8601 date formats, but I'm grasping at straws.
Unhandled Exception: DetailedApiRequestError(status: 400, message: Bad Request)
is what I'm getting from:
ANSWER
Answered 2021-Apr-08 at 06:37The issue is indeed related to the time, the Dart DateTime class does not format the time in a way Google likes (2021-04-12T08:30:00+03:00
which I've deduced from other languages' API implementations, and the source code of the package which does a .toString()
of the DateTime basically). Fair mention that Dart DateTime does provide a String
of ISO8601, Google wants an RFC3339
compliant date.
The way around this is to create the EventDateTime from a JSON object, and to use a hacky Dart extension. I apologize for the naming but it's annoying.
QUESTION
Background
We are planning to do a one-way migration of SVN to Git in Azure DevOps so that we can keep our commit history of messages. As you might expect we did a trial run, after much hair pulling and standing on the shoulders of other colleagues who came before we came up with the list of commands that finally worked after 26 hours of processing.
Those commands are:
Run in Git Bash to get list of all authors from SVN in Git format:
...ANSWER
Answered 2021-Mar-18 at 10:20I don't 100% know if the following is true but git svn fetch
is now completing without errors or simply stopping part way through.
I examined the SVN logs from the server and at the times the errors were occurring the SVN log was 0.5GB in size by the end of the day, the majority of which was not my Git migration. I suspect that there was some form of timeout occurring and that git frustratingly simply had a unhelpful or no error message. When the git svn fetch
command worked the SVN logs were down to 70MB by the end of the day.
Thus the moral of the story it seems is to check your SVN logs because git isn't going to tell you anything useful.
QUESTION
I have an azure AD registered application. With delegated permissions of a user with AllSites.FullControl, I'm able to get drive/root/delta in Graph API.
Problems I'm having making the delta calls as the delegated user are:
- the deltas are not consistent. Sometimes I get results back after changing the permissions of a file/folder, sometimes I don't
- Despite that I'm passing in these Prefer headers
deltashowsharingchanges, deltashowremovedasdeleted, deltatraversepermissiongaps
, I'm not getting back@microsoft.graph.sharedChanged
in the response.
The above issues are my primary questions.
Grasping at straws here, but please let me know if I would have better luck with an app-only authentication. If so, how to get it set up with my existing Azure AD registered application, without access to Powershell or Windows (e.g. if I need to use a certificate instead of client_id/client_secret, as there is conflicting information about this, and only instructions on how to get it done with Powershell). I've already started to try to test this, but have not successfully found information on how to get this working in a multi-tenant use-case, wherein I'm trying to access the Sharepoint of an outside tenant from an Azure AD registered app-only authenticated application. All existing instructions I've seen thus far are not multi-tenant and grant themselves permissions in their own Azure AD portal.
...ANSWER
Answered 2021-Mar-15 at 15:27It turned out that indeed, using app-only client credentials authentication was necessary to get @microsoft.graph.sharedChanged
in the response, though this is not documented anywhere. In addition, deltas are being returned consistently now. Presumably, Microsoft is doing something to try to return only deltas relevant to the delegated user, although that is not enough in my opinion to explain for the lack of deltas in some cases. Nevertheless, I'm getting the response I need using app-only client credentials.
Regarding use of certificate -- it was not necessary if accessing my own tenant where the app is registered, but if accessing a 3rd party tenant, a certificate was required instead of client_secret.
QUESTION
I am trying to create a JSON Cloudformation template for a new DynamoDB table. I am trying to set the TimeToLiveSpecification but I get errors and the Troposphere documentation isn't clear.
I have
...ANSWER
Answered 2021-Jan-28 at 15:07Try this (untested) with the TimeToLiveSpecification shown here:
QUESTION
I am creating views referring to system catalog views ( eg. pg_constraint ) which are to deployed to various databases with varying versions of postgresql. Later versions of system catalog views include columns that don't exist in prior versions of postgresql. I'd rather have a single version of my view that I can deploy widely instead of maintaining multiple versions so that when we (inevitably) upgrade some of our older databases, the view definition will not need to be updated ( who is going to remember to do that? )...
It's probably not feasible and perhaps I'm grasping at straws but I don't want to give up so easily while it's still possible someone may have a solution.
...ANSWER
Answered 2021-Jan-26 at 13:22Don't create a view on system catalogs, it will prevent you from upgrading with pg_upgrade
.
Use a function that either composes the query with dynamic SQL or executes different static queries based on the server version. You can then define a view using that function.
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