gclib | reusable code for bioinformatics projects | Dataset library
kandi X-RAY | gclib Summary
kandi X-RAY | gclib Summary
This is an eclectic collection of basic C++ code (functions, classes, templates) which is shared between a few of my bioinformatics projects. The main idea was to provide a core collection of data structures, trying to avoid unnecessary code dependencies of other heavy libraries, while minimizing build time. I had started gathering this code even before the C++ STL had been fully adopted as a cross-platform "standard". Even STL itself seems a bit on the heavy side (and keeps growing) compared to what I need in practice for many of my C++ projects, so often times I prefer to just use these simpler and leaner C++ classes and templates to provide most common data structures needed for my projects.
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QUESTION
I'm trying to create a basic application which is heavy on raw syscalls only, and I don't need the C library. I'm also trying to keep size to an absolute minimum. For functions like strcpy
, strcmp
, I'm hoping to use compiler intrinsics.
On Windows with MSVC/GCC I can use /NODEFAULTLIB
or -nostdlib
to detach from the C standard library. Then I'll simply link to kernel32.lib
, user32.lib
, to use functions like WriteFile
, CreateWindowExW
, etc. I'm trying to do the same on linux but I'm running into a few problems.
It seems like for some reason, the code of the syscalls read
, write
, ptrace,
process_vm_readv
, etc are actaully in gclib? I tried to use syscall(SYS_write, ...)
as well as I was hoping that'd be inlined into my program somehow but that still needs gclib. Is there a way to call these syscalls like on Windows, where I'd link to a system library instead of the C library? I'd like to avoid writing the syscall stubs myself using inline ASM. I'm starting to work with linux programming like this so I'm not too sure. Here's a simple test application I'm using (which isn't compiling):
ANSWER
Answered 2021-Mar-16 at 22:39Here is what I got:
QUESTION
Im very novice at java programming. Running into an error message while trying to make a browser using locally stored GECKOVIEW library. The build does complete but the app crashes. Help would be greatly appreciated because i'm very stuck and it's proven difficult to find information about problems arising with GeckoView.
Error message:
...ANSWER
Answered 2020-Apr-28 at 15:26Issues Resolved.
Bij adding the mentioned dependencies in the geckoview pom file to the dependencies block in build gradle app, the original problem was fixed.
A new problem arose when sqlite libraries failed to load. Apparently the new version of android studio defaults to extractnativelibs=false. By adding android:extractNativeLibs="true" to the androidmanifest.xml the issue was solved.
QUESTION
I'm trying to use the default aop proxy provided by Spring, but i'm getting an execption error.
Here is my code: A first class that run the test example.
...ANSWER
Answered 2019-Jul-05 at 10:56The problem in your code is that you are using the class MyDaoRepository instead of the dao
interface. You can cast your proxy to the interface dao but you can not cast it to its implementation. You need to modify your service code to use interfaces:
QUESTION
I have written several small scripts in python and build the binaries using pyinstaller.
When I would build them on my Ubuntu 16.04 machine -- they would run fine on the machine where I build them. But moving the file to a Centos / Redhat 7.4 machine would give me GCLIB and other .so version dependency errors.
- Building the same binary on docker with the same version of Centos would not give these errors.
- If I try running the binary compiled on Centos 7.4 on Centos 6.6 I would get errors again -- But building on Centos 6.6 it would work correctly with Centos 6.6
I have solved the problem using a lower version of Centos to build my binaries for now.
- My specific question is -- In Python, is it a common approach of building the binaries on different OSs based on the target OS that it is intended for (assuming linux targets only) or what I am doing is a hack / bad way of solving this problem?
I am trying to understand how this problem is approached in the standard way.
...ANSWER
Answered 2019-Apr-09 at 04:27As long as the binary produced by pyinstaller only depends on glibc, then it should be a valid approach to build it on the oldest system available, and it should work on future systems.
In general, glibc is designed to be backwards compatible, so that applications built against an older version of glibc will still run with a newer glibc, but not vice versa. It does this via symbol versioning, in which each symbol you link to can have a version associated with it, and any case in which a newer glibc has changed the ABI of some function, it will also have a compatibility routine with the old ABI exposed with the older symbol version, so that applications linked against the old one will dynamically link with the compatibility routine, while if you have an application linked against the newer symbol versions, there won't be the newer versions in an older glibc to dynamically link to.
While other libraries can also do this, not many library authors bother to, so newer versions may simply be incompatible, while the glibc developers generally try to preserve compatibility.
So yes, as long as the final binary links only to glibc, or to other libraries which follow a similar symbol versioning scheme to ensure that older binaries will still link properly to newer versions of the library, it is perfectly valid to build against an older version and then run it on newer versions of various Linux distros, and even generally across distros as well.
Unfortunately, there's no good way to get the linker to pick the older symbol versions if linking against a newer glibc, so frequently the easiest way to do this is within a Docker or other type of container containing an older distro that has the oldest glibc that you want to be compatible with.
QUESTION
I used the XADES4j project to sign electronic invoices using JavaSE-1.8 (jre1.8.0_121) 32-bit version + Windows32Bits + eclipse (32-bit Luna) + Gemalto token and it worked well. Now I'm using the Windows64 bit system, I have not changed anything: I installed the JavaSE-1.8 (jre1.8.0_121) 32-bit version, the same version of eclipse (32-bit) and the token Gemalto (gclib. 64bit dll). when running the signature from eclipse I encountered runtime errors at the pkcs11 security provider installation level :
...ANSWER
Answered 2018-Feb-07 at 10:24Install the Gemalto driver in another location that does not contain special characters
QUESTION
**1. Service usage: when you see a hibernate spring tutorial, they all say that for an entity (e.g. User in my case ) you must have a repository called UserRepository with methods like find, findAll, delete, etc. Normally the UserRepository extends some base Repository interface.
Then you have to add the UserService, which injects a UserRepository.
a. Must I have a UserService interface that is implemented by a UserServiceImpl?From my point of view it adds no value to have this. I can have UserService be a class and use Spring's ability to create proxy using GCLIB instead of JDKInterfaces.
b. Is it correct to write the UserService by copying every method from UserRepository and delegating to the @Autowired repository, and then add any other bussiness method?
c. If my UserService doesn't have any bussiness methods, it just delegates everything to the UserRepository, can I just skip the UserService and access directly the UserRepoisitory from my REST layer?
d. Let's say that I also have an Address entity. The user needs an Address when saving ( it is a one2one mandatory ). Is it ok from UserService to inject both UserRepository and AddressRepository inside of it, set up relations there and then call save on each repository? ( don't want to use cascading persist, I want to know how would I do without it since in some situation you cannot use cascading )
2. DTO usage: When you want to read data, you can fetch entities or fetch DTOs directly through JPQL ( or Criteria, I prefer JPQL ).
a. From my point of view, I would always use DTOs instead of entity fetching. It's because, I think SQL is simple, and if i have to think about entities merging, detach, attach , etc, I miss out the entire simplicity of SQL, and ORM becomes an enemy in terms of performance and complexity. So I would use DTO always when I read data and entities when I modify data. What do you think?
b . I want to return all the columns from the User entity. Is it ok to have a UserDTo or I am exaggerating and should just return a User entity? I am 50% - 50% on this.
c. I want to return partially some columns from User. Here I am for 75% DTO and 25% entity. What do you think?
d. I want to return some columns of User and some columns of Address. Here I am 100% for DTO ( although I could just join fetch Address ). What do you think?
Kind regards,
...ANSWER
Answered 2018-Jan-04 at 12:08I'll answer them one by one:
1.a) Yes, it does make sense. The Service layer is the transactional boundary and it's where you expose the business logic to the external world through a course-grained interface.
1.b) No, it's not. The UserService define business methods, not data access methods.
1.c) I'd still keep the Service.
1.d) Of course it is. You don't need to call the Services by the entity name. Name it by the business logic concern that they are expressing.
2.a) My rule is simple: entities when you plan on modifying and DTOs for read-only projections.
2.b) Same as 2.a.
2.c) Same as 2.a. If you need to modify the fetched data later, then use subentities.
2.d) Same as 2.a. If you need to modify the data, use entities or subentities. Otherwise, DTOs for read-only projections.
QUESTION
It is possible to delete the prefix "SunPKCS11-"? because always I get a provider whose name is "SunPKCS11-SmartCard" and not "SmartCard" .
this my code :
...ANSWER
Answered 2017-Nov-15 at 15:15As @EJP pointed, you cannot change the provider name. When you are creating the provider instance, Java prepends the string SunPKCS11-
prefix to the name you provide. You can look at the Java documentation about it here.
Once you have created your provider instance, it is recommended to get the name using the Provider.getName().
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