conterminator | Detection of incorrectly labeled sequences across kingdoms | Data Labeling library

by martin-steinegger C++ Version: GBIO License: GPL-3.0

X-Ray Key Features Code Snippets(3)Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | conterminator Summary

conterminator is a C++ library typically used in Artificial Intelligence, Data Labeling applications. conterminator has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Detection of incorrectly labeled sequences across kingdoms

Support

Quality

Security

License

Reuse

Support

conterminator has a low active ecosystem.

It has 46 star(s) with 7 fork(s). There are 3 watchers for this library.

It had no major release in the last 12 months.

There are 7 open issues and 7 have been closed. On average issues are closed in 77 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of conterminator is GBIO

Quality

conterminator has 0 bugs and 0 code smells.

Security

conterminator has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

conterminator code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

conterminator is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

conterminator releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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conterminator Key Features

No Key Features are available at this moment for conterminator.

conterminator Examples and Code Snippets

Getting started,Result

C++

Lines of Code : 20

License : Strong Copyleft (GPL-3.0)

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1.) Numeric identifier
2.) Contaminated identifier
3.) Kingdom (default: 0: Bacteria&Archaea, 1: Fungi, 2: Metazoa, 3: Viridiplantae, 4: Other Eukaryotes)
4.) Species name
5.) Alignment start
6.) Alignment end
7.) Corrected contig length (length

Getting started,Important Parameters,--kingdom

C++

Lines of Code : 9

License : Strong Copyleft (GPL-3.0)

Copy

! NEGATION 
|| OR  
&& AND 

2||2157,4751,33208,33090,2759&&!4751&&!33208&&!33090   

2||2157  # Bacteria OR Archaea 
4751     # Fungi
33208    # Metazoa
33090    # Viridiplantae  
2759&&!4751&&!33208&a

Install

C++

Lines of Code : 6

License : Strong Copyleft (GPL-3.0)

Copy

# SSE4.1
wget https://mmseqs.com/conterminator/conterminator-linux-sse41.tar.gz; tar xvfz conterminator-linux-sse41.tar.gz; export PATH=$(pwd)/conterminator/:$PATH
# AVX2
wget https://mmseqs.com/conterminator/conterminator-linux-avx2.tar.gz; tar xvfz

Community Discussions

Trending Discussions on Data Labeling

How can I do this split process in Python?

Replacing a character with a space and dividing the string into two words in R

Azure ML FileDataset registers, but cannot be accessed for Data Labeling project

QUESTION

How can I do this split process in Python?

Asked 2021-Dec-30 at 14:06

I'm trying to make a data labeling in a table, and I need to do it in such a way that, in each row, the index is repeated, however, that in each column there is another Enum class.

What I've done so far is make this representation with the same enumerator class.

A solution using the column separately as a list would also be possible. But what would be the best way to resolve this?

...

ANSWER

Answered 2021-Dec-30 at 13:57

Instead of using Enum you can use a dict mapping. You can avoid loops if you flatten your dataframe:

Source https://stackoverflow.com/questions/70532286

QUESTION

Replacing a character with a space and dividing the string into two words in R

Asked 2020-Nov-18 at 07:32

I have a dataframe that contains a column that includes strings separeted with semi-colons and it is followed by a space. But unfortunately in some of the strings there is a semi-colon that is not followed by a space.

In this case, This is what i'd like to do: If there is a space after the semi-colon we do not need a change. However if there are letters before and after the semi-colon, we should change semi-colon with space

i have this:

...

ANSWER

Answered 2020-Nov-16 at 07:24

Try something like:

Source https://stackoverflow.com/questions/64853962

QUESTION

Azure ML FileDataset registers, but cannot be accessed for Data Labeling project

Asked 2020-Oct-28 at 20:31

Objective: Generate a down-sampled FileDataset using random sampling from a larger FileDataset to be used in a Data Labeling project.

Details: I have a large FileDataset containing millions of images. Each filename contains details about the 'section' it was taken from. A section may contain thousands of images. I want to randomly select a specific number of sections and all the images associated with those sections. Then register the sample as a new dataset.

Please note that the code below is not a direct copy and paste as there are elements such as filepaths and variables that have been renamed for confidentiality reasons.

...

ANSWER

Answered 2020-Oct-27 at 22:39

Is the data behind virtual network by any chance?

Source https://stackoverflow.com/questions/64546521

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install conterminator

Conterminator requires a 64-bit Linux system (check that uname -a | grep x86_64 | wc -l is greater than 0) with at least a SSE4.1 instruction set (check that cat /proc/cpuinfo | grep sse4_1 | wc -l yields an output greater than 0).
Conterminator computes ungapped local alignments of all provided sequences and reports contamination across user-specifed specified taxa; by default this is done at the kingdom level.
Users can install Conterminator using the commands specified above. However, Conterminator can also be installed by compiling directly from the source code using the following commands.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: