nsg | # # # The NSG algorithm consists of two steps

nsg is a C++ library. nsg has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

###The NSG algorithm consists of two steps:. Assuming edges (u1, v1), (u2, v1), (u2, v2),. where one of the conditions is strictly less. The main file is located in nsg.cpp. The binary can be created by : g++ -O3 nsg.cpp -o nsg -std=c++11. The nsg binary is currently compiled on a Linux machine. ###Usage: NSG [-flags] [inputFilename] [outputFilename]. t : run with t threads (default is max number of cores on your machine ) must be followed by a number. x : don't create output file. e : do read extension step. example: './nsg -xt 1 bact1.reads' will run in serial, disable output, and use reads from bact1.reads. ###File Input The input to the nsg algorithm should be a list of reads, one per line. Alternatively, fasta files with read headers (e.g., >read5) can also be used. The .revreads sample files contain 8000 simulated reads of length 3000, followed by their reverse complements for E. coli K12, R. sphaeroides, and S. aureus.