dcm | A lightweight C DICOM library | Messaging library
kandi X-RAY | dcm Summary
kandi X-RAY | dcm Summary
A lightweight C++ DICOM library for reading and writing DICOM files.
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QUESTION
Hi everyone can you please help me i'm getting this bug with random crop augmentation. TypeError: slice indices must be integers or None or have an index method
Code is below.
...ANSWER
Answered 2021-Jun-03 at 05:20I think the error is in this line:
QUESTION
I'd ask a better question, but I don't don't know how. Thanks for your help.
***ISSUE: I'm sending array vari to a function and it's coming back changed even though I didn't return it or even use same variable name. Desired function: variable vari does not change
I've logged the function and isolated the change to the [].forEach() statement below, noted with ***. I send vari but return varis and assign to new variable sum. How does this change the vari variable?
...ANSWER
Answered 2021-May-29 at 03:19vari
is a 2D array. That means that every element in vari
is an array as well, and as such passed by reference and subject to mutation.
The Array.splice() method mutates its argument array. In the code, each varis[varis.length-1].splice()
call modifies an array object that is copied from vari1
by reference, and therefore also vari0
whose elements are array objects that are copied to vari1
by reference. This is what causes vari
to mutate.
To avoid the issue, use one these patterns:
QUESTION
I am using fo-Dicom to access image streams. I have unit tests that call a method to load test DICOM files. To automate the process in the build pipeline, I switched from using the image path to loading a resource. I now load my test DICOM file like so:
...ANSWER
Answered 2021-May-19 at 15:48The solution was to fully read the stream when opening the DICOM file.
QUESTION
I am using Matlab R2020b and I would like to display additional info when hovering the cursor over a data point in a 2D plot. I have values of angle and radius for a polarplot. Each data point is associated with a time. I create the plot similar to this:
...ANSWER
Answered 2021-May-05 at 08:23You want to have the time as a third value in your polarplot
when selecting data points, and to do this you can add the time (variable t
) to the ZData
property of the polarplot
.
To do this you want to use a handler for the polarplot axes, i.e. hax = polarplot(phi, r, '-sb');
so that you can put the time as ZData: hax.ZData = t;
. When you've done this, the variable pos
in myfunction
will have a length of 3 instead of 2 so your if
-statement will be executed.
Your updated code should look something like this:
QUESTION
solved: requires explicit return statement for each filter. I thought the single boolean in each filter would be clear enough. by @adiga
I want to find the elements in one array (dcm) that are not found in a second array (vari). I want to match only two elements, vp (string type) and vd (date type). I've made sure there are some rows in dcm that meet the condition, but I'm getting no results.
Did I do up the code wrong? is there a better way to do this (.includes .contains .indexOf)?
...ANSWER
Answered 2021-May-03 at 16:42Just in case, as it said @adiga you don't need return
statements if you don't use {}
.
Most likely this will work fine:
QUESTION
I read a multi-frame DICOM file with pydicom, after that I write it into a new file. However when I open the DICOM file, the image has an offset/shift.
...ANSWER
Answered 2021-Apr-27 at 23:35Encapsulation of Pixel Data (both single and multi-framed) is only required for compressed transfer syntaxes, such as JPEG or RLE Lossless. If you have an uncompressed syntax such as Explicit VR Little Endian then no encapsulation is necessary:
QUESTION
I have a question regarding glob and file pathing - lets say I have a static file path in the form of
G:\ML_CDetector_ImageArchive\BreastCancer\RawFolder\Duke-Breast-Cancer-MRI\Duke-Breast-Cancer-MRI
I want to add variable pathing for the folders afterwards since the folder naming convention is dissimilar in each patient - while the patient folder convention is standard across the board like:
Breast_MRI_XXX
- Where x is a number from 1-922 (Which I have been able to handle though the use of a while loop) and finally the inner folder is where it gets a bit funky but once again I havent been able to handle this through glob with the following use of a wildcard operator:
f"{currentPatient}\\*\\
Now within the folder there are several more folders which I want to enter such that there is a partial match of a name:
gl.glob(f"{currentPatient}\\*\\[3rd]*\\*.dcm")
but to my dismay I have not been able to acquire the correct folder as when I do
ANSWER
Answered 2021-Apr-21 at 03:37I found a solution to my problem - Using glob I can iterate through a folder and return a list with all given folders using this methodology I can select the appropriate element from the list and considering that the number of inner file paths after the patient is static (meaning only one folder is located within each patient followed by more folders within that structure)
I used glob again to match the specific inner folder and used the first element in the list to return a string of the folder path and then using string concatenation I built a dynamic folder search by using glob to match the inner folders.
QUESTION
I am using a VBA Macro from another worksheet. I can only pass a string as input (or I want to stick to this structure as any change will results in changing alot of code). However, the available macro is using a Variant:
...ANSWER
Answered 2021-Apr-17 at 06:46It's giving you error because dcm_files
is not an array, you just need to change dcm_files(1) = DCMfile
to dcm_files = DCMfile
.
QUESTION
I have pictures in .dcm format. I'm looking for the width and length of the pixel. As far as I know that Dicominfo gives the information of the picture. Do you know what parameters are used to obtain the width and length of the pixel in the Dicominfo? I had an idea that I first need the FOVx "Field Of View" and then I can divide by the number of pixels. This is how I get the width and length of the pixel.
I am very grateful for every answer.
...ANSWER
Answered 2021-Mar-31 at 13:15Not sure what you exactly mean by "length". Furthermore, geometrical information (pixel size in mm) may vary regarding the tag numbers, depending on the type of object. The attribute tags I am providing here should work for the majority of DICOM images that have geometrical information at all.
- image size in pixels (x,y) -> Columns (0028,0011), Rows (0028,0010)
- size of the pixels (y,x) -> Pixel Spacing (0028,0030)
Pixel Spacing is a multi-valued attribute from which you can obtain two values which are separated by a Backslash "\". Not sure how the API of DicomInfo allows access to multiple values in the same attribute.
Note the difference "(y,x)" in Pixel Spacing. This is very unintuitive, but it is like it is.
QUESTION
This ANTLR4 parser grammar errors a 'no viable alternative' error when I try to parse an input. The only rules I know of that matches the part of the input with the error are the rules 'retblock_expr' and 'block_expr'. I have put 'retblock_expr' infront of 'block_expr' and put 'non_assign_expr' infront of 'retblock_expr' but it still throws the error.
input:
print(do { return a[3] })
full error:
line 1:11 no viable alternative at input '(do { return'
parser grammar:
...ANSWER
Answered 2021-Mar-27 at 14:13Your PRINT
token can only be matched by the blk_expr
rule through this path:
There is no path for retblock_expr
to recognize anything that begins with the PRINT
token.
As a result, it will not matter which order you have elk_expr
or retblock_expr
.
There is no parser rule in your grammar that will match a PRINT
token followed by a LPR
token. a block_expr
is matched by the program
rule, and it only matches (ignoring wsp) block_expr
or retblock_expr
. Neither of these have alternatives that begin with an LPR
token, so ANTLR can't match that token.
print(...)
would normally be matched as a function call expression that accepts 0 or more comma-separated parameters. You have no sure rule/alternative defined. (I'd guess that it should be an alternative on either retblock_expr
or block_expr
That's the immediate cause of this error. ANTLR really does not have any rule/alternative that can accept a LPR
token in this position.
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