demuxlet | Genetic multiplexing of barcoded single cell RNA-seq

by statgen C++ Version: Current License: Apache-2.0

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kandi X-RAY | demuxlet Summary

demuxlet is a C++ library. demuxlet has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

demuxlet is a software tool to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing. demuxlet takes (1) a SAM/BAM/CRAM file produced by the standard 10x sequencing platform, or any other barcoded single cell RNA-seq (with proper --tag-UMI and --tag-group) options (2) a VCF/BCF file containing the genotype (GT), posterior probability (GP), or genotype likelihood (GL) to assign each barcode to a specific sample (or a pair of samples) in the VCF file.

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Support

demuxlet has a low active ecosystem.

It has 75 star(s) with 20 fork(s). There are 9 watchers for this library.

It had no major release in the last 6 months.

There are 52 open issues and 24 have been closed. On average issues are closed in 35 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of demuxlet is current.

Quality

demuxlet has 0 bugs and 0 code smells.

Security

demuxlet has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

demuxlet code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

demuxlet is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

demuxlet releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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demuxlet Key Features

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demuxlet Examples and Code Snippets

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Community Discussions

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Vulnerabilities

No vulnerabilities reported

Install demuxlet

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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