pingpongpro | Find ping-pong signatures in piRNA-Seq data
kandi X-RAY | pingpongpro Summary
kandi X-RAY | pingpongpro Summary
pingpongpro is a C++ library. pingpongpro has no bugs, it has no vulnerabilities and it has low support. However pingpongpro has a Non-SPDX License. You can download it from GitHub.
Piwi-interacting RNAs (piRNAs) are a class of small non-coding RNAs, predominantly active in the germ line. There, they limit the detrimental effect of transposons on the genome. They do so by forming a complex with Piwi proteins. The complex binds and then cleaves mRNA molecules of active transposons. The resulting mRNA fragments induce the production of more piRNAs, thus reinforcing the anti-trans-poson response in a feed-forward loop called the "ping-pong cycle". A key question in ping-pong cycle research is identification of piRNAs which are amplified through the cycle. PingPongPro is a command-line tool for detecting ping-pong cycle activity in piRNA-Seq data. PingPongPro was developed at the Institute of Molecular Biology gGmbH in Mainz.
Piwi-interacting RNAs (piRNAs) are a class of small non-coding RNAs, predominantly active in the germ line. There, they limit the detrimental effect of transposons on the genome. They do so by forming a complex with Piwi proteins. The complex binds and then cleaves mRNA molecules of active transposons. The resulting mRNA fragments induce the production of more piRNAs, thus reinforcing the anti-trans-poson response in a feed-forward loop called the "ping-pong cycle". A key question in ping-pong cycle research is identification of piRNAs which are amplified through the cycle. PingPongPro is a command-line tool for detecting ping-pong cycle activity in piRNA-Seq data. PingPongPro was developed at the Institute of Molecular Biology gGmbH in Mainz.
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pingpongpro has a low active ecosystem.
It has 2 star(s) with 1 fork(s). There are 2 watchers for this library.
It had no major release in the last 12 months.
There are 1 open issues and 4 have been closed. On average issues are closed in 24 days. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of pingpongpro is v1.0
Quality
pingpongpro has no bugs reported.
Security
pingpongpro has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
License
pingpongpro has a Non-SPDX License.
Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.
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pingpongpro releases are available to install and integrate.
Installation instructions are available. Examples and code snippets are not available.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of pingpongpro
pingpongpro Key Features
No Key Features are available at this moment for pingpongpro.
pingpongpro Examples and Code Snippets
No Code Snippets are available at this moment for pingpongpro.
Community Discussions
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Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install pingpongpro
Please download the latest release from the [releases page](https://github.com/suhrig/pingpongpro/releases) to obtain pre-compiled binaries and the user manual, which includes detailed documentation of the installation routine, usage and the algorithm.
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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