plant | Trait-Driven Models of Ecology and Evolution

by traitecoevo C++ Version: v2.0.0 License: No License

X-Ray Key Features Code Snippets(1)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | plant Summary

plant is a C++ library typically used in Simulation applications. plant has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

The plant package for R is an extensible framework for modelling size- and trait-structured demography, ecology and evolution in simulated forests. At its core, plant is an individual-based model where plant physiology and demography are mediated by traits. Individual plants from multiple species can be grown in isolation, in patches of competing plants or in metapopulations under a disturbance regime. These dynamics can be integrated into metapopulation-level estimates of invasion fitness and vegetation structure. Accessed from R, the core routines in plant are written in C++. The package provides for alternative physiology models and for capturing trade-offs among parameters. A detailed test suite is provided to ensure correct behaviour of the code.

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Quality

Security

License

Reuse

Support

plant has a low active ecosystem.

It has 51 star(s) with 19 fork(s). There are 12 watchers for this library.

It had no major release in the last 12 months.

There are 57 open issues and 233 have been closed. On average issues are closed in 533 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of plant is v2.0.0

Quality

plant has no bugs reported.

Security

plant has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

plant does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

plant releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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plant Key Features

No Key Features are available at this moment for plant.

plant Examples and Code Snippets

plant: A package for modelling forest trait ecology and evolution,Installation

C++

Lines of Code : 6

License : No License

Copy

remotes::install_github("traitecoevo/plant", dependencies=TRUE)

remotes::install_github("traitecoevo/plant@v1.0.0", dependencies=TRUE)

git clone https://github.com/traitecoevo/plant

devtools::install_deps()

devtools::install()

devtools::load_all

Community Discussions

Trending Discussions on plant

How can I combine rows of data when their character values are equal? (R)

how can I pass table or dataframe instead of text with entity recognition using spacy

Replace certain words in a 2D array

Unable to scrape table in dynamic multitab website using rvest

easyadmin crud controllers: adding value into related entity

Is there a way to iterate through a column in pandas if it is an index

linalg.solve() iteration over dictionaries

Filter from string in the param that comes from another parameter in memory - XSLT

Finding if the values in one column are within the range of several other columns

Django query certain attribute via foreign key

QUESTION

How can I combine rows of data when their character values are equal? (R)

Asked 2021-Jun-15 at 18:02

I have a dataset that was recorded by observation(each observation has its own row of data). I am looking to combine/condense these rows by the plant they were found on - currently a character variable. All other columns are numerical vales.

EX:

This is the raw data |Sci_Name|Honeybee_count|Other_bee_Obsevrved|Stem_count| |---|---|---|---| |Zizia aurea|1|5|10| |Asclepias viridiflora|15|1|3| |Viola unknown|0|0|4| |Zizia aurea|0|2|6| |Zizia aurea|3|6|3| |Asclepias viridiflora|8|2|17|

and I want:

Sci_Name Honeybee_count Other_bee_Obsevrved Stem_count Zizia aurea 4 13 19 Asclepias viridiflora 23 3 20 Viola unknown 0 0 4

I am currently pulling this data from a CSV already in table form. I have been attempting to create a new table/data frame with one entry of each plant species, and blanks/0s for each other variable, which I can then use to c-binding the two together. This, however, has been clunky at best and I am having trouble figuring out how to have each row check itself. I am open to any approach, let me know what you think!

Thanks :D

...

ANSWER

Answered 2021-Jun-15 at 18:02

We can use the formula method in aggregate from base R. On the rhs of the ~, specify the grouping variable and on the lhs, use . for denoting the rest of the variables. Specify the FUN as sum and it will do the column wise sum by group

Source https://stackoverflow.com/questions/67990582

QUESTION

how can I pass table or dataframe instead of text with entity recognition using spacy

Asked 2021-Jun-15 at 09:55

The following link shows how to add multiple EntityRuler with spaCy. The code to do that is below:

...

ANSWER

Answered 2021-Jun-15 at 09:55

Imagine that your dataframe is

Source https://stackoverflow.com/questions/67983109

QUESTION

Replace certain words in a 2D array

Asked 2021-Jun-12 at 18:44

The method plant() takes a String and a 2D array of String[][] as its inputs. The strings within the array should not be replaced by the inputted word.

...

ANSWER

Answered 2021-Jun-03 at 10:30

This should help you:

Source https://stackoverflow.com/questions/67795059

QUESTION

Unable to scrape table in dynamic multitab website using rvest

Asked 2021-Jun-11 at 15:38

my objective

The objective of my code is to scrape the information in the Characteristics tab of the following url, preferably as a data frame

...

ANSWER

Answered 2021-Jun-11 at 15:38

The data is dynamically retrieved from an API call. You can retrieve direct from that url and simplify the json returned to get a dataframe:

Source https://stackoverflow.com/questions/67938126

QUESTION

easyadmin crud controllers: adding value into related entity

Asked 2021-Jun-11 at 14:08

I have question concerning easyadmin3. In my admin panel I have a productCrudController and one of the values I want to be able to set when creating a new product is the price. For the price I have a separate table though which contains all my prices with a date. The idea being that the price of a product van change over time and my client wants to be able to have an overview of the price history for each product.

So in my productCrudController I work with an associationField to link to my prices entity. However I'm really stuck with the following practical issue: I don't want to have to add a price in a priceCrudController which I would then be able to select in my productCrudController (the way the associationField expects me to do).

What I want is that I can create a product and input a price which would then be inserted into my prices table.

My code:

productCrudController ->

Right now I have a field for prices where I can select a price in a dropdown menu, but so I have to add the price first with a priceCrudController, which really isn't practical.

...

ANSWER

Answered 2021-Jun-11 at 14:08

You can create a form for the Prices entity and then use it in your product

Source https://stackoverflow.com/questions/67840798

QUESTION

Is there a way to iterate through a column in pandas if it is an index

Asked 2021-Jun-10 at 13:44

I have a pandas DataFrame which looks like this

...

ANSWER

Answered 2021-Jun-10 at 13:44

You can use get_level_values to filter.

Source https://stackoverflow.com/questions/67921251

QUESTION

linalg.solve() iteration over dictionaries

Asked 2021-Jun-09 at 23:11

Here's the context: I have to produce a mix of different products. I don't want to produce them in single lots for each product, but instead I want to make lots as small and as homogenous as possible, with each lot containing a small amount of the total production.

For each product I know the demand:

...

ANSWER

Answered 2021-Jun-09 at 23:11

The problem with your code is in the else clause, where you set split to an int. Indeed, you then try to call split[1] right after, thus getting an error. A solution to this problem is to duplicate the splits.update instruction and modify it to work with an int, as described below:

Source https://stackoverflow.com/questions/67912639

QUESTION

Filter from string in the param that comes from another parameter in memory - XSLT

Asked 2021-Jun-09 at 21:40

I need some tip here.

I have this XML:

...

ANSWER

Answered 2021-Jun-09 at 20:05

You could do it this way :

Source https://stackoverflow.com/questions/67910693

QUESTION

Finding if the values in one column are within the range of several other columns

Asked 2021-Jun-09 at 14:11

I am looking for an easy way to find whether the value in a column lies within the range of values in other columns.

My input looks like this:

...

ANSWER

Answered 2021-Jun-09 at 13:03

You might try something like this with rowwise and c_across:

Source https://stackoverflow.com/questions/67904465

QUESTION

Django query certain attribute via foreign key

Asked 2021-Jun-09 at 10:48

I want to query certain data from a foreign key class. Is there a way to make it directly in the query?

I want to do the following query:

...

ANSWER

Answered 2021-Jun-09 at 10:32

If you want to include the name of the city, you can work with an F object:

Source https://stackoverflow.com/questions/67902044

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install plant

The plant package can be installed direct from github using the remotes package:. To install a specific (older) release, decide for the version number that you want to install in https://github.com/traitecoevo/plant/releases e.g. with "v1.0.0" replaced by the appropriate version number. Note, the latest version of plant resides on the develop branch, which is sporadically released. plant follows semantic versioning meaning that major version indicate a potential break in backward compatibility. If familiar with git you might find it easiest to build plant directly from the source code. This is most useful if developing new models or strategies, or to contribute new features. First, clone the plant repository. Open an R session in the folder, then to install dependencies run. Then to compile the project.
You must be using R 4.1.0 or newer. At this stage the package is not on CRAN. You're options for installing are described below.
Installation requires a C++11 compatible C compiler (OSX >= 10.10/Yosemite satisfies this, as do standard linux Ubuntu 12.04 and 14.04). On Windows machines you will need to install Rtools. When I tried this in Rstudio, the program automagically sensed the absence of a compiler and asked if I wanted to install Rtools. Click Yes!

Support

An overview of the plant package is given by the above publication. Further background on the default FF16 growth model is available in Falster et al 2011 (10.1111/j.1365-2745.2010.01735.x) and Falster et al 2017 (10.1101/083451).

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