SeqLib | fermi interface for interrogating sequence data

by walaj C++ Version: 1.2.0 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | SeqLib Summary

SeqLib is a C++ library. SeqLib has no bugs, it has no vulnerabilities and it has low support. However SeqLib has a Non-SPDX License. You can download it from GitHub.

[Coverage Status] C++ interface to HTSlib, BWA-MEM and Fermi.

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SeqLib has a low active ecosystem.

It has 123 star(s) with 31 fork(s). There are 18 watchers for this library.

It had no major release in the last 12 months.

There are 19 open issues and 27 have been closed. On average issues are closed in 114 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of SeqLib is 1.2.0

Quality

SeqLib has 0 bugs and 0 code smells.

Security

SeqLib has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

SeqLib code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

SeqLib has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

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SeqLib releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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SeqLib Key Features

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SeqLib Examples and Code Snippets

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Community Discussions

Trending Discussions on SeqLib

zlib.h:34:19: fatal error: zconf.h: No such file or directory #include "zconf.h"

QUESTION

zlib.h:34:19: fatal error: zconf.h: No such file or directory #include "zconf.h"

Asked 2021-May-21 at 08:54

There are quite some posts about this error, but I was not able to solve it, I hope you can come up with the solution. I am on a Ubuntu machine.

~/graphmap2$

In this folder, I downloaded zlib. You can see the picture

After some Googling, I also noticed that there is no -lz parameter, so I also added that manually as you can see below

However, I still get the same error as when none of the above were done.

Might it be that the path to zlib is not clear for the compiler? However, I installed it in this same folder.

The make file looks like the below:

...

ANSWER

Answered 2021-May-21 at 03:35

Seems compiler is not able to find the file in the includes path you mentioned.
First check if zconf.h file is available on your machine and get that location. If the file is available then just give the path of the file to the compiler using -I option.

Source https://stackoverflow.com/questions/67621721

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install SeqLib

You will need to have JsonCPP (v1.9.4 or higher) installed. I have successfully compiled with GCC-4.5+ and Clang on Linux and OSX. SeqLib is compatible with c++11 and later.
After building, you will need to add the relevant header directories:. And need to link the SeqLib static library and Fermi, BWA and HTSlib libraries. To add support for reading BAMs, etc with HTTPS, FTP, S3, Google cloud, etc, you must compile and link with libcurl. Remember then to then link any projects made with SeqLib with the additional -lcurl -lcrypto flags.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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