codeml_sba | PAML 's Codeml with Smoothed Bootstrap Aggregation

by Jehops C Version: Current License: No License

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kandi X-RAY | codeml_sba Summary

codeml_sba is a C library. codeml_sba has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

#smoothed bootstrap aggregation (sba). sba is a method that uses bootstrapping of site patterns and kernel smoothing to account for errors in maximum likelihood parameter estimates in codeml [1]. it is currently working with codon models m2a, branch-site a, and m8. on systems with bsd make, simply run make. on systems with gnu make, such as gnu/linux and os x run make -f makefile.gnu. install the resulting executable, codeml_sba, wherever you like, although you probably want it somewhere in your executable path. to use the method, codeml_sba must be run three times. first, a number of bootstrap samples must be generated from a sequence alignment. to do this, run codeml_sba with bootstrap = n in the control file, where n is the number of bootstrap samples to generate. next, parameters must be estimated for each of the bootstrap samples. to

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Support

codeml_sba has a low active ecosystem.

It has 1 star(s) with 0 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

codeml_sba has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of codeml_sba is current.

Quality

codeml_sba has no bugs reported.

Security

codeml_sba has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

codeml_sba does not have a standard license declared.

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Without a license, all rights are reserved, and you cannot use the library in your applications.

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codeml_sba releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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codeml_sba Key Features

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