pysam | Python Wrapper for the System Advisor Model | Wrapper library

by NREL C Version: v4.1.0 License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | pysam Summary

pysam is a C library typically used in Utilities, Wrapper applications. pysam has no vulnerabilities, it has a Permissive License and it has low support. However pysam has 1 bugs. You can download it from GitHub.

Python Wrapper for the System Advisor Model

Support

Quality

Security

License

Reuse

Support

pysam has a low active ecosystem.

It has 87 star(s) with 41 fork(s). There are 18 watchers for this library.

It had no major release in the last 12 months.

There are 9 open issues and 77 have been closed. On average issues are closed in 71 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pysam is v4.1.0

Quality

pysam has 1 bugs (0 blocker, 0 critical, 1 major, 0 minor) and 133 code smells.

Security

pysam has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pysam code analysis shows 0 unresolved vulnerabilities.

There are 29 security hotspots that need review.

License

pysam is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pysam releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

It has 2735 lines of code, 120 functions and 24 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

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pysam Key Features

No Key Features are available at this moment for pysam.

pysam Examples and Code Snippets

No Code Snippets are available at this moment for pysam.

Community Discussions

Trending Discussions on pysam

Snakemake Conda environment does not seem to be activating though it says it is

Why does installing pysam python package fail?

python click: "got unexpected extra arguments"

QUESTION

Snakemake Conda environment does not seem to be activating though it says it is

Asked 2021-Mar-30 at 22:22

I am running Snakemake with the --use-conda option. Snakemake successfully creates the environment, which should include pysam. I am able to manually activate this created environment, and within it, run my script split_strands.py, which imports the module pysam, with no problems. However, when running the Snakemake pipeline, I get the following error log:

...

ANSWER

Answered 2021-Mar-30 at 22:22

Turns out that the newer version of snakemake 6.0.0+ must have some issue with this. I used snakemake 5.8.2 instead and things work just fine. Not sure exactly what's going on under the hood but seems identical to this issue: https://github.com/snakemake/snakemake/issues/883

Source https://stackoverflow.com/questions/66863103

QUESTION

Why does installing pysam python package fail?

Asked 2020-May-26 at 20:59

I'm new to python and running the command:

pip install pysam

Which results in:

...

ANSWER

Answered 2020-Feb-12 at 22:37

if you have anaconda, try this:

conda install -c bioconda pysam

Source https://stackoverflow.com/questions/60197890

QUESTION

python click: "got unexpected extra arguments"

Asked 2020-Apr-06 at 07:11

I have written a small and simple interface with Click, I get this error "Error: Got unexpected extra arguments" and I just can't figure out why this occurs?

Here is my setup.py:

...

ANSWER

Answered 2020-Apr-06 at 07:11

Your preprocess function calls itself, resulting in the "unexpected extra arguments" error (see Click: "Got unexpected extra arguments" when passing string for a similar case). This is because its definition hides the one that you imported from .preprocessor.

You should instead import the external preprocess function using a different name, e.g.:

Source https://stackoverflow.com/questions/61054566

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pysam

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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