plink-ng | comprehensive update to the PLINK association analysis | Code Analyzer library
kandi X-RAY | plink-ng Summary
kandi X-RAY | plink-ng Summary
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QUESTION
I'm in the process of making a singularity container with PLINK v 1.9 (a genetics software, not the PuTTY interface, https://www.cog-genomics.org/plink/1.9/dev) inside it. I'm able to successfully compile the software within the container and I can see the PLINK files and functions when I shell into the container. To make things easier for my end users, I am trying to add the software's main folder to the singularity $PATH so that they can just call plink from the command line, but I'm not able to achieve this.
So far I have tried:
- Assigning SINGULARITYENV_APPEND_PATH=path/to/plink in the %runscript section of my singularity recipe file.
- Moving the source code folder for Plink into /usr/local/bin of the Singularity
- Setting a variable PLINKDIR=/path/to/plink and the export it in the %environment section of my recipe file similar to what they have done here.
None of these methods work. The only way I can access this package is by spelling out the full path in my singularity exec command.
...ANSWER
Answered 2019-Feb-28 at 21:28You should be able to just add it to your path:
QUESTION
So, I'm building my docker with the following Dockerfile
...ANSWER
Answered 2019-Mar-28 at 18:03It sounds as if unzip is a dependency of the R package. Since you are asking apt to remove unzip, it will also need to remove anything that depends on unzip. This is typical behavior for a package manager.
You can see the dependency tree for a package with the apt-cache dotty
command, which will output the dependencies in dot format. Running apt-cache dotty r-base
shows:
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