libBigWig | A C library for handling bigWig files

 by   dpryan79 C Version: 0.4.6 License: MIT

kandi X-RAY | libBigWig Summary

kandi X-RAY | libBigWig Summary

libBigWig is a C library. libBigWig has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

A C library for reading/parsing local and remote bigWig and bigBed files. While Kent's source code is free to use for these purposes, it's really inappropriate as library code since it has the unfortunate habit of calling exit() whenever there's an error. If that's then used inside of something like python then the python interpreter gets killed. This library is aimed at resolving these sorts of issues and should also use more standard things like curl and has a friendlier license to boot.
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              libBigWig has a low active ecosystem.
              It has 58 star(s) with 22 fork(s). There are 5 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 3 open issues and 21 have been closed. On average issues are closed in 25 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of libBigWig is 0.4.6

            kandi-Quality Quality

              libBigWig has no bugs reported.

            kandi-Security Security

              libBigWig has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              libBigWig is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              libBigWig releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

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            libBigWig Key Features

            No Key Features are available at this moment for libBigWig.

            libBigWig Examples and Code Snippets

            Example,Writing example
            Cdot img1Lines of Code : 75dot img1License : Permissive (MIT)
            copy iconCopy
            #include "bigWig.h"
            
            int main(int argc, char *argv[]) {
                bigWigFile_t *fp = NULL;
                char *chroms[] = {"1", "2"};
                char *chromsUse[] = {"1", "1", "1"};
                uint32_t chrLens[] = {1000000, 1500000};
                uint32_t starts[] = {0, 100, 125,
                      
            Example
            Cdot img2Lines of Code : 47dot img2License : Permissive (MIT)
            copy iconCopy
            #include "bigWig.h"
            int main(int argc, char *argv[]) {
                bigWigFile_t *fp = NULL;
                bwOverlappingIntervals_t *intervals = NULL;
                double *stats = NULL;
                if(argc != 2) {
                    fprintf(stderr, "Usage: %s {file.bw|URL://path/file.bw}\n", argv  
            A note on bigBed entries
            Cdot img3Lines of Code : 20dot img3License : Permissive (MIT)
            copy iconCopy
            table RnaElements 
            "BED6 + 3 scores for RNA Elements data "
                (
                string chrom;      "Reference sequence chromosome or scaffold"
                uint   chromStart; "Start position in chromosome"
                uint   chromEnd;   "End position in chromosome"
                string   

            Community Discussions

            Trending Discussions on libBigWig

            QUESTION

            grep pattern in LD_LIBRARY_PATH
            Asked 2018-Apr-11 at 16:41

            I want to export a folder to LD_LIBRARY_PATH but only once. I tried the following to determine if the folder was already present

            ...

            ANSWER

            Answered 2018-Apr-11 at 16:41

            You could try something like:

            Source https://stackoverflow.com/questions/49779842

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install libBigWig

            You can download it from GitHub.

            Support

            Support for accessing bigBed files was added in version 0.3.0. The function names used for accessing bigBed files are similar to those used for bigWig files. Other functions, such as bwClose and bwInit, are shared between bigWig and bigBed files. See test/testBigBed.c for a full example.
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            https://github.com/dpryan79/libBigWig.git

          • CLI

            gh repo clone dpryan79/libBigWig

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            git@github.com:dpryan79/libBigWig.git

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