modbam2bed | new bioinformatic resource that replaces the functionality

Usage: modbam2bed [OPTION...]   [ ...]
modbam2bed -- summarise one or more BAM with modified base tags to bedMethyl.

 General options:
  -e, --extended             Output extended bedMethyl including counts of
                             canonical,  

pip install modbampy

from modbampy import ModBam
with ModBam(args.bam) as bam:
    for read in bam.reads(args.chrom, args.start, args.end):
        for pos_mod in read.mod_sites():
            print(*pos_mod)

from modbampy import ModBam
with ModBam