gridengine | open build service
kandi X-RAY | gridengine Summary
kandi X-RAY | gridengine Summary
This project is now also on the Open Build Service. There you also find rpms for openSUSE (Leap, Tumbleweed), SLES and CentOS. This repository contains a fork of the Son of Grid Engine project in conjunction with some documentation and fixes to get the gridengine working on more recent Linux systems.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of gridengine
gridengine Key Features
gridengine Examples and Code Snippets
spack install openmpi%gcc@8.2.0 schedulers="sge"
$ qconf -sp openmpi
pe_name openmpi
slots 1024
user_lists NONE
xuser_lists NONE
start_proc_args NONE
stop_proc_args NONE
allocation_rule $fill_up
contr
# zypper install gcc java-1_8_0-openjdk java-1_8_0-openjdk-devel javacc junit ant automake hwloc-devel libopenssl-devel libdb-4_8-devel pam-devel libXt-devel motif-devel xorg-x11-devel
## Notes: * for the openjdk you can also use a more recent versi
# yum install csh java-1.8.0-openjdk java-1.8.0-openjdk-devel gcc ant automake hwloc-devel openssl-devel libdb-devel pam-devel libXt-devel motif-devel ncurses-libs ncurses-devel
$ cd sge-8.1.9/source
$ ./scripts/bootstrap.sh
$ ./aimk -no-herd -no-j
Community Discussions
Trending Discussions on gridengine
QUESTION
I have successfully setup and run the Kaldi Aspire recipe on my WSL. Now i was working on a POC where i want to extend the ASPIRE recipe by making a new corpus, dictionary, language model and merge it with the original HCLG.fst. I followed this blog post. I have been able to sucessfully create the new dictionary, language model and merged the input files. However i am getting the following error when i try to recompile the HCLG.fst with new Lexicon and grammar.
...ANSWER
Answered 2020-Mar-27 at 14:23The error message
QUESTION
I've set in my Constants
...ANSWER
Answered 2020-Feb-17 at 16:00Short anwer:
The image viewhelper does not automatically apply any dimensions defined in the constants. f:image is part of ext:fluid, the constants you set are part of ext:fluid_styled_content. The image viewhelper always needs a width or a maxWidth argument if you want to set one. You need to pass your constants to the frontend.
Long answer:
You can see, how it is done in fluid_styled_content:
Have a look into: typo3/sysext/fluid_styled_content/Configuration/TypoScript/ContentElement/Image.typoscript A DataProcessor passes this constants to the GalleryProcessor
QUESTION
I just installed gridengine & getting error when doing qstat
:
ANSWER
Answered 2018-Dec-11 at 13:59Most of the setup issues went away when installing the Debian version. need version 8 since debian is ver 8 & only debian master works ( gridengine-master_8.1.9+dfsg-8_amd64.deb).
QUESTION
When running the analyze.rb script from Univa Grid Engine Open Core , I get a TypeError:
...ANSWER
Answered 2018-Mar-14 at 08:29The script adds a class Queue
like this:
QUESTION
I'm trying to use software collections on CentOS 6.8 server, but it won't set the environment variable PATH corectly if the command passed is "bash", but "tcsh" works... (however we don't use tcsh on this machine)
Example:
...ANSWER
Answered 2017-May-12 at 23:23Thank you Dominic you were on to something. I originally checked ~/.bash*
files as well as /etc/bash*
and /etc/profile
but after your comment, I found several scripts in /etc/profile.d/
that we being executed, and one of them set the PATH explicitly without appending. I added $PATH
back in there and now scl enable
is working as expected!
QUESTION
I have the following code to analyze a huge dataframe file (22G, over 2million rows and 3K columns). I tested the code in a smaller dataframe and it ran OK (head -1000 hugefile.txt
). However, when I ran the code on the huge dataframe, it gave me "segmentation fault" core dump. It output a core.number binary file.
I did some internet search and came up with using low_memory =False
, and trying to read the DataFrame by defining chunksize=1000, iterator= True
, and then pandas.concat the chunks, but this still gave me memory problem (core dump). It wouldn't even read in the entire file before the core dump as I tested just read the file and print some text. Please help and let me know if there are solutions that I can analyze this huge file.
Version
python version: 3.6.2
numpy version: 1.13.1
pandas version: 0.20.3
OS: Linux/Unix
Script
...ANSWER
Answered 2017-Aug-05 at 23:09You aren't processing your data in chunks at all.
With data1 = pd.read_csv('...', chunksize=10000, iterator=True)
,
data1
becomes a pandas.io.parser.TextFileReader
, which is an iterator that yields chunks of 10000 rows of your CSV data as a DataFrame.
But then pd.concat
consumes this entire iterator, and so attempts to load the whole CSV into memory, defeating the purpose of using chunksize
and iterator
entirely.
Properly using chunksize
and iterator
In order to process your data in chunks, you have to iterate over the actual DataFrame chunks yielded by the iterator read.csv
provides.
QUESTION
My organization has a server cluster running Univa Grid Engine 8.4.1, with users submitting various kinds of jobs, some using a single CPU core, and some using OpenMPI to utilize multiple cores, all with varying and unpredictable run-times.
We've enabled a ticketing system so that one user can't hog the entire queue, but if the grid and queue are full of single-CPU jobs, no multi-CPU job can ever start (they just sit at the top of the queue waiting for the required number of cpu slots to become free, which generally never happens). We're looking to configure Resource Reservation such that, if the MPI job is the next in the queue, the grid will hold slots open as they become free until there's enough to submit the MPI job, rather than filling them with the single-CPU jobs that are further down in the queue.
I've read (here for example) that the grid makes the decision of which slots to "reserve" based on how much time is remaining on the jobs running in those slots. The problem we have is that our jobs have unknown run-times. Some take a few seconds, some take weeks, and while we have a rough idea how long a job will take, we can never be sure. Thus, we don't want to start running qsub with hard and soft time limits through -l h_rt and -l s_rt, or else our jobs could be killed prematurely. Resource Reservation appears to be using the default_duration, which we set to infinity for lack of a better number to use, and treating all jobs equally. Its picking slots filled by month-long jobs which have already been running for a few days, instead of slots filled by minute-long jobs which have only been running for a few seconds.
Is there a way to tell the scheduler to reserve slots for a multi-CPU MPI job as they become available, rather than pre-select slots based on some perceived run-time of the jobs in them?
...ANSWER
Answered 2017-Mar-15 at 19:43Unfortunately I'm not aware of a way to do what you ask - I think that the reservation is created once at the time that the job is submitted, not progressively as slots become free. If you haven't already seen the design document for the Resource Reservation feature, it's worth a look to get oriented to the feature.
Instead, I'm going to suggest some strategies for confidently setting job runtimes. The main problem when none of your jobs have runtimes is that Grid Engine can't reserve space infinitely in the future, so even if you set some really rough runtimes (within an order of magnitude of the true runtime), you may get some positive results.
- If you've run a similar job previously, one simple rule of thumb is to set max runtime to 150% of the typical or maximum runtime of the job, based on historical trends. Use
qacct
or parse theaccounting
file to get hard data. Of course, tweak that percentage to whatever suits your risk threshold. - Another rule of thumb is to set the max runtime not based on the job's true runtime, but based on a sense around "after this date, the results won't be useful" or "if it takes this long, something's definitely wrong". If you need an answer by Friday, there's no sense in setting the runtime limit for three months out. Similarly, if you're running md5sum on typically megabyte-sized files, there's no sense in setting a 1-day runtime limit; those jobs ought to only take a few seconds or minutes, and if it's really taking a long time, then something is broken.
- If you really must allow true indefinite-length jobs, then one option is to divide your cluster into infinite and finite queues. Jobs specifying a finite runtime will be able to use both queues, while infinite jobs will have fewer resources available; this will incentivize users to work a little harder at picking runtimes, without forcing them to do so.
Finally, be sure that the multi-slot jobs are submitted with the -R y
qsub flag to enable the resource reservation system. This could go in the system default sge_request
file, but that's generally not recommended as it can reduce scheduling performance:
Since reservation scheduling performance consumption is known to grow with the number of pending jobs, use of -R y option is recommended only for those jobs actually queuing for bottleneck resources.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install gridengine
The included spec file gridengine.spec is meant for use with then SUSE open build service.
For the graphical installer, you need to run aimk with java support. For that you will need the following additional dependencies. Then building should work with. If you get Java version errors, please adjust build.properties for your needs.
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