popPhylABC | Scripts used for ABC analysis

 by   popgenomics C Version: Current License: No License

kandi X-RAY | popPhylABC Summary

kandi X-RAY | popPhylABC Summary

popPhylABC is a C library. popPhylABC has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

Datasets from the popPhyl project: Converting fasta files into input for ABC analysis: popPhyl2ABC_v2.py. This code depends on the C++ library libsequence by calling polydNdS to get synonymous positions. An incompatibility had been reported with version of libsequence >2.0 !!! To compile mscalc, the calculator of statistics: gcc *.c -lm -o mscalc. To compile msnsam, the coalescent simulator (Ross-Ibarra et al, 2008): ./clms. The following programs have to be linked to your bin/ : mscalc priorgen.py msnsam popPhyl2ABC_v2.py polydNdS.
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            kandi-support Support

              popPhylABC has a low active ecosystem.
              It has 1 star(s) with 3 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              popPhylABC has no issues reported. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of popPhylABC is current.

            kandi-Quality Quality

              popPhylABC has no bugs reported.

            kandi-Security Security

              popPhylABC has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              popPhylABC does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              popPhylABC releases are not available. You will need to build from source code and install.

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            popPhylABC Key Features

            No Key Features are available at this moment for popPhylABC.

            popPhylABC Examples and Code Snippets

            No Code Snippets are available at this moment for popPhylABC.

            Community Discussions

            No Community Discussions are available at this moment for popPhylABC.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install popPhylABC

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/popgenomics/popPhylABC.git

          • CLI

            gh repo clone popgenomics/popPhylABC

          • sshUrl

            git@github.com:popgenomics/popPhylABC.git

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