sparser | Sparser : Raw Filtering for Faster Analytics over Raw Data | Runtime Evironment library

 by   stanford-futuredata C Version: Current License: BSD-3-Clause

kandi X-RAY | sparser Summary

kandi X-RAY | sparser Summary

sparser is a C library typically used in Server, Runtime Evironment, Nodejs applications. sparser has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

This code base implements Sparser, raw filtering for faster analytics over raw data. Sparser can parse JSON, Avro, and Parquet data up to 22x faster than the state of the art. For more details, check out our paper published at VLDB 2018.
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              sparser has a low active ecosystem.
              It has 418 star(s) with 48 fork(s). There are 43 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 4 open issues and 0 have been closed. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of sparser is current.

            kandi-Quality Quality

              sparser has no bugs reported.

            kandi-Security Security

              sparser has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              sparser is licensed under the BSD-3-Clause License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              sparser releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            sparser Key Features

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            sparser Examples and Code Snippets

            Wraps an experimental mlir sparser .
            pythondot img1Lines of Code : 3dot img1License : Non-SPDX (Apache License 2.0)
            copy iconCopy
            def wrapped_experimental_mlir_sparsify(input_data_str):
              """Wraps experimental mlir sparsify model."""
              return _pywrap_toco_api.ExperimentalMlirSparsifyModel(input_data_str)  

            Community Discussions

            QUESTION

            Sorting union of streams to identify user sessions in Apache Flink
            Asked 2020-Apr-02 at 12:01

            I have two streams of events

            • L = (l1, l3, l8, ...) - is sparser and represents user logins to a IP
            • E = (e2, e4, e5, e9, ...) - is a stream of logs the particular IP

            the lower index represents a timestamp... If we joined the two streams together and sorted them by time we would get:

            • l1, e2, l3, e4, e5, l8, e9, ...

            Would it be possible to implement custom Window / Trigger functions to group the event to sessions (time between logins of different users):

            • l1 - l3 : e2
            • l3 - l8 : e4, e5
            • l8 - l14 : e9, e10, e11, e12, e13
            • ...

            The problem which I see is that the two streams are not necessarily sorted. I thought about sorting the input stream by time-stamps. Then it would be easy to implement the windowing using GlobalWindow and custom Trigger - yet it seems that it is not possible.

            Am I missing something or is it definitely not possible to do so in current Flink (v1.3.2)?

            Thanks

            ...

            ANSWER

            Answered 2019-Dec-24 at 11:33

            Question: shouldn't E3 come before L4?

            Sorting is pretty straightforward using a ProcessFunction. Something like this:

            Source https://stackoverflow.com/questions/47576408

            QUESTION

            Any comparison studies of advantage and drawbacks of High vs Standard Dynamic Range for machine vision techniques?
            Asked 2019-Dec-28 at 06:12

            My intuition says that a High Dynamic Range image would provide more stable features and edges for various image segmentation and other low level vision algorithms to work with - but then it could go the other way with the larger number of bits leading to sparser features as well as the extra cost involved in generating HDR if it needs to be derived using exposure fusion or such instead of from hardware.

            Can anyone point out any research on the topic, ideally it would be good to find out if there has been a comparison study for various machine vision techniques using Standard and High dynamic range images.

            ...

            ANSWER

            Answered 2019-Dec-28 at 06:12

            Since High Dynamic Range (HDR) images encode information captured from images at various exposure levels, they provide more visual information than traditional LDR image sequences for computer-vision tasks such as image-segmentation.

            HDR input images help improve accuracy of vision models with better feature learning and low-level feature extraction as there are fewer saturated (over-exposed or under-exposed) regions in the HDR image when compared to their LDR counterparts.

            However, there are certain challenges with using HDR inputs such as an increase in computational resources needed to process HDR images and the data needed to avoid learning sparse features due to an increase in their precision.

            Here is a research article that compares LDR vs HDR inputs for a machine vision task: Comparative Analysis between LDR and HDR Images for Automatic Fruit Recognition and Counting. Quoting from the research article: "The obtained results show that the use of HDR images improves the detection performance to more than 30% when compared to LDR".

            Below are a few more related research articles you might find useful:

            Source https://stackoverflow.com/questions/59471303

            QUESTION

            generate random numbers within a range with a percentage of them a specific value
            Asked 2019-Dec-08 at 02:42

            I need to create large (see more on this below) random graphs to compare performance of Dijkstra, Bellman-Ford, and Floyd's algorithms on shortest path graph traversal. I'm storing the adjacencies in an array. So far, I generated random weights between vertices, and filled the main diagonal with 0's. I also have symmetry about the main diagonal (I'm assuming the graphs are undirected but not necessarily completely connected).

            The random values are in the range 0 - 24 ish, generated using rand() % 25. The problem is that I'd like the graphs to be sparser (i.e. have less edges). Is there a way to generate random numbers within a range and have about 1/3 to 1/2 of the generated numbers be a specific value? Note that the random distribution isn't very important for what I'm doing...

            Another question: how large of a graph should I test to see performance differences? 10 vertices? 100? 1000? 10000000?

            ...

            ANSWER

            Answered 2019-Dec-08 at 02:42

            C++ offers the discrete_distribution and uniform_int_distribution classes that together achieve what you want. An example follows:

            Source https://stackoverflow.com/questions/59231787

            QUESTION

            Eigen: Obtain the kernel of a sparse matrix
            Asked 2019-May-22 at 23:19

            Given a sparse matrix A and a vector b, I would like to obtain a solution x to the equation A * x = b as well as the kernel of A.

            One possibility is to convert A to a dense representation.

            ...

            ANSWER

            Answered 2019-May-22 at 23:19

            I think @chtz's answer is almost correct, except we need to take the last A.cols() - qr.rank() columns. Here is a mathematical derivation.

            Say we do a QR decomposition of your matrix Aᵀ as

            Aᵀ * P = [Q₁ Q₂] * [R; 0] = Q₁ * R

            where P is the permutation matrix, thus

            Aᵀ = Q₁ * R * P⁻¹.

            We can see that Range(Aᵀ) = Range(Q₁ * R * P⁻¹) = Range(Q₁) (because both P and R are invertible).

            Since Aᵀ and Q₁ have the same range space, this implies that A and Q₁ᵀ will also have the same null space, namely Null(A) = Null(Q₁ᵀ). (Here we use the property that Range(M) and Null(Mᵀ) are complements to each other for any matrix M, hence Null(A) = complement(Range(Aᵀ)) = complement(Range(Q₁)) = Null(Q₁ᵀ)).

            On the other hand, since the matrix [Q₁ Q₂] is orthonormal, Null(Q₁ᵀ) = Range(Q₂), thus Null(A) = Range(Q₂), i.e., kernal(A) = Q₂.

            Since Q₂ is the right A.cols() - qr.rank() columns, you could call rightCols(A.cols() - qr.rank()) to retrieve the kernal of A.

            For more information on kernal space, you could refer to https://en.wikipedia.org/wiki/Kernel_(linear_algebra)

            Source https://stackoverflow.com/questions/54766392

            QUESTION

            How to speed up a Cosmos DB aggregate query?
            Asked 2019-May-12 at 15:01

            Our cosmos db aggregate query seems slow and costs a lot of RUs. Here are the details (plus see screenshot below): 2.4s and 3222RUs to count a result set of 414k records. Also this for just one count. Normally we would want to do a sum on many fields at once (possible only within a single partition), but performance for that is much worse.

            There are 2 million records in this collection. We are using Cosmos DB w/SQL API. This particular collection is partitioned by country_code and there are 414,732 records in France ("FR") and the remainder in US. Document size is averages 917 bytes and maybe min is 800 bytes, max 1300 bytes.

            Note that we have also tried a much sparser partitioning key like device_id (of which there are 2 million, 1 doc per device here) which has worse results for this query. The c.calcuated.flag1 field just represents a "state" that we want to keep a count of (we actually have 8 states that I'd like to summarize on).

            The indexing on this collection is the default, which uses "consistent" index mode, and indexes all fields (and includes range indexes for Number and String). RU setting is at 20,000, and there is no other activity on the DB.

            So let me know your thoughts on this. Can Cosmos DB be used reasonably to get a few sums or counts on fields without ramping up our RU charges and taking a long time? While 2.4s is not awful, we really need sub-second queries for this kind of thing. Our application (IoT based), often needs individual documents, but also sometimes needs these kinds of counts across all documents in a country.

            Is there a way to improve performance?

            ...

            ANSWER

            Answered 2019-May-10 at 12:26

            For the specific query shown, there is no need to specify table name, and you could try to limit 1, some performance will be improved. For example:

            SELECT COUNT(1) FROM c WHERE country_code="FR" AND calculated.flag=1 LIMIT 1

            Also, do not forget to carefully analyse your query execution, I am not sure in Cosmos, but like PostreSQL approach, EXPLAIN ANALYSE. Be also sure you are using the best type of variables, for example, varchar(2) instead of varchar(3). I would recommend to change character types of the countries per numbers, if you are filtering them (as you point out). For example, FR=1, GR=2 and so on. This will also improve performance. Finally, if country code and calculated flag are related, create a unique variable defining them. If nothing of these work, check for client performance, and even hardware.

            Source https://stackoverflow.com/questions/55930571

            QUESTION

            Home-brew implementation of a least squares method in R showing unexpected behavior
            Asked 2019-Apr-10 at 15:00

            I am building an example to show, graphically, how the least square method works. I am applying a numerical approach where I feed R a number of combinations of possible values of intercept (a) and slope (b), then compute the sum of squares (SSE) for all possible combinations. The combinations of a and b with associated the lowest SSE should be the best one, but somehow my estimates of a are always off mark compared to the real value computed by lm(). On top of that, My estimate of a is sensitive to the range of possible values of a given to R - the broader the range, the more the estimate of a is off.

            Here is my example. I'm using the dataset "longley", built in R:

            ...

            ANSWER

            Answered 2018-May-24 at 13:38

            @ben-bolker is right. It is not entirely correct to say that your "estimate of b is spot on." The difference between the value that minimizes SSE in your example, 27.84, and the OLS estimate, 27.83626, turns out to significantly affect the intercept estimate.

            Source https://stackoverflow.com/questions/50508425

            QUESTION

            Converting from sparse to dense to sparse again decreases density after constructing sparse matrix
            Asked 2019-Mar-14 at 19:41

            I am using scipy to generate a sparse finite difference matrix, constructing it initially from block matrices and then editing the diagonal to account for boundary conditions. The resulting sparse matrix is of the BSR type. I have found that if I convert the matrix to a dense matrix and then back to a sparse matrix using the scipy.sparse.BSR_matrix function, I am left with a sparser matrix than before. Here is the code I use to generate the matrix:

            ...

            ANSWER

            Answered 2019-Mar-14 at 19:41

            [I have been informed that my answer is incorrect. The reason, if I understand, is that Scipy is not using Lapack for creating matrices but is using its own code for this purpose. Interesting. The information though unexpected has the ring of authority. I shall defer to it!

            [I will leave the answer posted for reference, but no longer assert that the answer were correct.]

            Generally speaking, when it comes to complicated data structures like sparse matrices, you have two cases:

            1. the constructor knows the structure's full contents in advance; or
            2. the structure is designed to be built up gradually so that the structure's full contents are known only after the structure is complete.

            The classic case of the complicated data structure is the case of the binary tree. You can make a binary tree more efficient by copying it after it is complete. Otherwise, the standard red-black implementation of the tree leaves some search paths as long as twice as long as others—which is usually okay but is not optimal.

            Now, you probably knew all that, but I mention it for a reason. Scipy depends on Lapack. Lapack brings several different storage schemes. Two of these are the

            • general sparse and
            • banded

            schemes. It would appear that Scipy begins by storing your matrix as sparse, where the indices of each nonzero element are explicitly stored; but that, on copy, Scipy notices that the banded representation is the more appropriate—for your matrix is, after all, banded.

            Source https://stackoverflow.com/questions/55169282

            QUESTION

            Match multiple strings across multiple multiple columns and create a single yes/no (1/0) column
            Asked 2019-Jan-13 at 14:58

            Edited to add code:

            I am trying to replicate some work from a colleague that uses SAS. We're having an issue with the import in SAS which converts text (which matches boolean) to numeric.

            The purpose of this work is to identify particular records to pass on, so we need the values to be preserved as originally imported (something I think R will be able to do). Right now we're fixing the issue manually because it's a small number of records but that may not always be true.

            Where I'm hitting a snag is that I need to replicate their matrix array in R. There are multiple conditions that should be flagged with a 1 if they meet the condition, as follows: SAS Code

            I need to be able to evaluate if there is one of 34 potential strings (or partial strings (in SAS, the colon shortens a comparison value to the same length as the evaluation value and compares them) in one of 12 columns (e.g. :Q16 means the string only need start with Q16). Additionally, any one of the 12 could have a value through it does get sparser in later fields.

            I am trying to find the most efficient and compact approach, if possible.

            I'm still somewhat new at R for more complex problems so I am stymied. I've tried a few approaches with grep and grepl but none have born any fruit. When I tried regex, I tried using each string individually in ifelse and then I also tried one larger string with the "|" operator but no luck either. I also tried base (apply) and dplyr approaches.

            Any help is appreciated.

            The structure of the data is: Example Table

            Code for Example Data:

            ...

            ANSWER

            Answered 2018-Sep-19 at 21:22

            For this, I modified your string a bit. In short, i converted your dataframe from wide to long, then I summarized each column as either having (TRUE) or not having (FALSE) any of the strings you wanted.

            Source https://stackoverflow.com/questions/52413138

            QUESTION

            (AWS) What happens to a python script without enough CPU?
            Asked 2018-Aug-13 at 02:51

            My small AWS EC2 instance runs a two python scripts, one to receive JSON messages as a web-socket(~2msg/ms) and write to csv file, and one to compress and upload the csvs. After testing, the data(~2.4gb/day) recorded by the EC2 instance is sparser than if recorded on my own computer(~5GB). Monitoring shows the EC2 instance consumed all CPU credits and is operating on baseline power. My question is, does the instance drop messages because it cannot write them fast enough?

            Thank you to anyone that can provide any insight!

            ...

            ANSWER

            Answered 2018-Aug-13 at 02:51

            It depends on the WebSocket server.

            If your first script cannot run fast enough to match the message generation speed on server side, the TCP receive buffer will become full and the server will slow down on sending packets. Assuming a near-constant message production rate, unprocessed messages will pile up on the server, and the server could be coded to let them accumulate or eventually drop them.

            Even if the server never dropped a message, without enough computational power, your instance would never catch up - on 8/15 it could be dealing with messages from 8/10 - so instance upgrade is needed.

            Does data rate vary greatly throughout the day (e.g. much more messages in evening rush around 20:00)? If so, data loss may have occurred during that period.

            But is Python really that slow? 5GB/day is less than 100KB per second, and even a fraction of one modern CPU core can easily handle it. Perhaps you should stress test your scripts and optimize them (reduce small disk writes, etc.)

            Source https://stackoverflow.com/questions/51814464

            QUESTION

            Calculating spinv with SVD
            Asked 2018-Jul-15 at 04:24
            Background

            I'm working on a project involving solving large underdetermined systems of equations.

            My current algorithm calculates SVD (numpy.linalg.svd) of a matrix representing the given system, then uses its results to calculate the Moore-Penrose pseudoinverse and the right nullspace of the matrix. I use the nullspace to find all variables with unique solutions, and the pseudo-inverse to find out it's value.

            However, the MPP (Moore Penrose pseudo-inverse) is quite dense and is a bit too large for my server to handle.

            Problem

            I found the following paper which details a sparser pseudoinverse that maintains most of the essential properties of the MPP. This is obviously of much interest to me, but I simply don't have the math background to understand how he's calculating the pseudoinverse. Is it possible to calculate it with SVD? If not, what's the best way to go about it?

            Details

            These are the lines of the paper which I think are probably relevant but I'm not antiquated enough to understand

            • spinv(A) = arg min ||B|| subject to BA = In where ||B|| denotes the entrywise l1 norm of B

            • This is in general a non-tractable problem, so we use the standard linear relaxation with the l1 norm

            • sspinv(A) = ητ {[spinv(A)]}, with ητ (u) = u1|u|≥τ

            Edit

            Find my code and more details on the actual implementation here

            ...

            ANSWER

            Answered 2018-Jul-15 at 04:24

            As I understand, here's what the paper says about sparse-pseudoinverse:

            It says

            We aim at minimizing the number of non-zeros in spinv(A)

            This means you should take the L0 norm (see David Donoho's definition here: the number of non-zero entries), which makes the problem intractable.

            spinv(A) = argmin ||B||_0 subject to B.A = I

            So they turn to convex relaxation of this problem so it can be solved by linear-programming.

            This is in general a non-tractable problem, so we use the standard linear relaxation with the `1 norm.

            The relaxed problem is then

            spinv(A) = argmin ||B||_1 subject to B.A = I (6)

            This is sometimes called Basis pursuit and tends to produce sparse solutions (see Convex Optimization by Boyd and Vandenberghe, section 6.2 Least-norm problems).

            So, solve this relaxed problem.

            The linear program (6) is separable and can be solved by computing one row of B at a time

            So, you can solve a series of problems of the form below to obtain the solution.

            spinv(A)_i = argmin ||B_i||_1 subject to B_i.A = I_i

            where _i denotes the ith row of the matrix.

            See here to see how to convert this absolute value problem to a linear program.

            In the code below, I slightly alter the problem to spinv(A)_i = argmin ||B_i||_1 subject to A.B_i = I_i where _i is the ith column of the matrix, so the problem becomes spinv(A) = argmin ||B||_1 subject to A.B = I. Honestly, I don't know if there's a difference between the two. Here I'm using scipy's linprog simplex method. I don't know the internals of simplex to say if it uses SVD.

            Source https://stackoverflow.com/questions/51273038

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