5 best C++ Genomics libraries in 2024

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by marketing.admin@openweaver.com dot icon Updated: Feb 2, 2023

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C++ is an object-oriented programming language that is fast, efficient, and powerful. C++ is one of the most popular languages for implementing and distributing bioinformatics software. Genomics is the study of genes and their functions. It includes the sequencing and analysis of genomes, which are complete sets of DNA within a single cell of an organism. In the field of genomics, with the proliferation of next-generation sequencing (NGS), the amount of DNA sequence data generated has increased exponentially. This has led to the development of new tools and algorithms to handle these enormous levels of data. Several open source libraries have been created that allow developers to quickly and easily build genomic analysis tools without having to start from scratch. There are several popular C++ Genomics open source libraries available for developers: nucleus - Python and C code for reading and writing genomics data; abyss - Assemble large genomes using short reads; vcftools - A set of tools written in Perl and C for working with VCF files, such as those generated by the 1000 Genomes Project.

nucleusby google

C++ doticonstar image 734 doticonVersion:0.6.0doticon
License: Others (Non-SPDX)

Python and C++ code for reading and writing genomics data.

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            nucleusby google

            C++ doticon star image 734 doticonVersion:0.6.0doticon License: Others (Non-SPDX)

            Python and C++ code for reading and writing genomics data.
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                      vcftoolsby vcftools

                      C++ doticonstar image 420 doticonVersion:v0.1.16doticon
                      License: Weak Copyleft (LGPL-3.0)

                      A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

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                                vcftoolsby vcftools

                                C++ doticon star image 420 doticonVersion:v0.1.16doticon License: Weak Copyleft (LGPL-3.0)

                                A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
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                                          abyssby bcgsc

                                          C++ doticonstar image 268 doticonVersion:2.3.7doticon
                                          License: Others (Non-SPDX)

                                          :microscope: Assemble large genomes using short reads

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                                                    abyssby bcgsc

                                                    C++ doticon star image 268 doticonVersion:2.3.7doticon License: Others (Non-SPDX)

                                                    :microscope: Assemble large genomes using short reads
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                                                              regenieby rgcgithub

                                                              C++ doticonstar image 132 doticonVersion:v3.2.7doticon
                                                              License: Others (Non-SPDX)

                                                              regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

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                                                                        regenieby rgcgithub

                                                                        C++ doticon star image 132 doticonVersion:v3.2.7doticon License: Others (Non-SPDX)

                                                                        regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
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                                                                                  GenomicsDBby GenomicsDB

                                                                                  C++ doticonstar image 81 doticonVersion:v1.5.0doticon
                                                                                  License: Others (Non-SPDX)

                                                                                  Highly performant data storage for importing, querying and transforming variant data.

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                                                                                            GenomicsDBby GenomicsDB

                                                                                            C++ doticon star image 81 doticonVersion:v1.5.0doticon License: Others (Non-SPDX)

                                                                                            Highly performant data storage for importing, querying and transforming variant data.
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