StarMap | Rendering of stars in the night sky using the HYG database
kandi X-RAY | StarMap Summary
kandi X-RAY | StarMap Summary
Rendering of stars in the night sky using the HYG database It uses a geometry shader (or optionally a baked billboard mesh) to render thousands of stars as billboard sprites at little cost. You can use it as a background in your space or sailing game or.. anything else.
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QUESTION
I have a function with a list of objects, two list of int and an int (an ID) as parameters, which returns a tuple of two list of int. this function works very well but when my list of ID grows, it takes a lot of time. Having already used multiprocessing in other projects, it seemed to me that the situation was appropriate for the use of multiprocessing Pool.
However, I get an error _pickle.PicklingError
when launching it.
I have spent the past days looking for alternatives ways of doing this : I discovered pathos
ProcessPool
that runs forever with no indication of the problem. I have tried ThreadingPool
as an accepted answer sugested, but it is obviously not adapted to my issue since it does not use multiple CPUs and doesnt speed up the process.
Here is a sample of my function, it is not a reproductible example since it is specific to my case. But I believe the function is pretty clear : It returns a tuple of two lists, created in a for loop.
...ANSWER
Answered 2022-Mar-24 at 11:43If anyone stumble upon this question, the reason this error happened even with a very simplist function is because of the way I was running the python script. As it is well explained in the comments by ShadowRanger, the function needs to be defined at the top level. Within PyCharm, "Run File in Python Console" does not simply run it, but puts a wrapper around.
By running the file the proper way, or calling python myscript.py
, theres no raised error.
QUESTION
I'm trying to port over some "parallel" Python code to Azure Databricks. The code runs perfectly fine locally, but somehow doesn't on Azure Databricks. The code leverages the multiprocessing
library, and more specifically the starmap
function.
The code goes like this:
...ANSWER
Answered 2021-Aug-22 at 09:31You should stop trying to invent the wheel, and instead start to leverage the built-in capabilities of Azure Databricks. Because Apache Spark (and Databricks) is the distributed system, machine learning on it should be also distributed. There are two approaches to that:
Training algorithm is implemented in the distributed fashion - there is a number of such algorithms packaged into Apache Spark and included into Databricks Runtimes
Use machine learning implementations designed to run on a single node, but train multiple models in parallel - that what typically happens during hyper-parameters optimization. And what is you're trying to do
Databricks runtime for machine learning includes the Hyperopt library that is designed for the efficient finding of best hyper-parameters without trying all combinations of the parameters, that allows to find them faster. It also include the SparkTrials API that is designed to parallelize computations for single-machine ML models such as scikit-learn. Documentation includes a number of examples of using that library with single-node ML algorithms, that you can use as a base for your work - for example, here is an example for scikit-learn.
P.S. When you're running the code with multiprocessing, then the code is executed only on the driver node, and the rest of the cluster isn't utilized at all.
QUESTION
Given the MWE below:
...ANSWER
Answered 2022-Feb-15 at 15:49I wouldn't call it exactly criminal, but I would call it malpractice.
Your code in thread_function
constitutes a critical section whose execution needs to be serialized so that only a single process can be executing it at a time. Even what appears to be a single statement, shared_resource[val] += 1
, consists of multiple bytecode instructions and two processes could read the same initial value of shared_resource[val]
and store the same updated value. But clearly multiple processed running in parallel could clearly find that there are no keys in the dictionary and will be storing identical keys.
QUESTION
Goal: run Inference in parallel on multiple CPU cores
I'm experimenting with Inference using simple_onnxruntime_inference.ipynb.
Individually:
...ANSWER
Answered 2022-Jan-21 at 16:56def run_inference(i):
output_name = session.get_outputs()[0].name
return session.run([output_name], {input_name: inputs[i]})[0] # [0] bc array in list
outputs = pool.map(run_inference, [i for i in range(test_data_num)])
QUESTION
I wrote the following code
...ANSWER
Answered 2022-Jan-04 at 10:59try running this changing with Pool(2) as p
with:
with Pool(1) as p
, with Pool(2) as p
, with Pool(4) as p
, with Pool(8) as p
and have a look at the different outputs
QUESTION
With the following code :
...ANSWER
Answered 2021-Dec-11 at 21:45Yes. Pool.starmap()
- and Pool.map()
- return a result list with results in left-to-right order of the function applied to the iterable of arguments. Same way, e.g., the built-in map()
, and itertools.starmap()
, work in this respect, although those return generators rather than lists.
The only function of this kind that does not guarantee result order is Pool.imap_unordered()
, which returns an iterable which defines nothing about the order in which it returns results.
QUESTION
I have a large array arr1
of shape (k, n)
where both k
and n
are of the order 1e7. Each row contains only a few hundred non-zero elements and is sparse.
For each row k
I need to do element-wise multiplication with arr2
of shape (1, n)
.
Currently I perform this multiplication using the multiply
method of scipy.sparse.csc_matrix
and the multiplication is performed as part of a function that I am minimising which means it is evaluated thousands of times and causes a large computational load. More importantly, I've found that this function runs on a single core.
I've instead tried to find ways of parallelising this calculation by splitting the array into sub-arrays in k
to calculate in parallel. Much to my dismay I find that the parallelised version runs even slower. So far I've tried implementations in Dask, Ray, and multiprocessing. Below are the implementations I've been using on a machine with ~500GB RAM and 56 CPUs.
I don't understand why the paralell version run so slowly. This is my first time parallelising my own code so any assistance is greatly appreciated.
Setting up data (for reproducibility) ...ANSWER
Answered 2021-Nov-18 at 18:44If I'm understanding your implementations correctly, you haven't actually partitioned the arrays in any of these cases. so all you've done is run the exact same workflow, but on a different thread, so the "parallel" execution time is the original runtime plus the overhead of setting up the distributed job scheduler and passing everything to the second thread.
If you want to see any total time improvements, you'll have to actually rewrite your code to operate on subsets of the data.
In the dask case, use dask.array.from_numpy
to split the array into multiple chunks, then rewrite your workflow to use dask.array operations rather than numpy ones. Alternatively, partition the data yourself and run your function on subsets of the array using dask distributed's client.map
(see the quickstart).
None of these approaches will be easy, and you need to recognize that there is an overhead (both in terms of actual compute/network usagee/memory etc as well as a real investment of your time) in any of these, but if total runtime is important then it'll be worth it. See the dask best practices documentation for more background.
Update:
After your iteration with dask.array, your implementation is now faster than the single-threaded wall time, and yes, the additional CPU time is overhead. For your first time trying this, getting it to be faster than numpy/scipy (which, by the way, are already heavily optimized and are likely parallelizing under the hood in the single-threaded approach) is a huge win, so pat yourself on the back. Getting this to be even faster is a legitimate challenge that is far outside the scope of this question. Welcome to parallelism!
Additional reading:
QUESTION
I want to return already completed task values in multiprocessing for a given timeout after killing all the ongoing and queued tasks.
For example, the following function needed to be run parallelly using pool.starmap()
For values, 1 to 100.
ANSWER
Answered 2021-Nov-10 at 13:59This answer contains all the information you need: To retrieve results while they are being generated, imap_unordered is probably the best function to use as it returns results to the main thread once they are completed. You would just have to perform a bit of bookkeeping to ensure that the results end up in the right position in your result queue. A way to achieve that would be to pass an index to the parallelized function which that function then returns.
Some simplified pseudo-code below that you should be able to derive a solution with:
QUESTION
I need to merge two large datasets based on string columns which don't perfectly match. I have wide datasets which can help me determine the best match more accurately than string distance alone, but I first need to return several 'top matches' for each string.
Reproducible example:
...ANSWER
Answered 2021-Oct-22 at 18:33This doesn't answer your question but I'd be curious to know if it speeds things up. Just returning dictionaries instead of DataFrames should be much more efficient:
QUESTION
i've been trying to test this simple piece of code on my machine on Jupyter and the cell just runs indefinitely without outputing anything. Is there some kind of bug or something? I use the exact same piece of code for a pandas process with pool.map
and everything just works fine, but can't figure out what is happening here.
ANSWER
Answered 2021-Oct-12 at 05:19This happens because the worker processes attempt to import sumP
, which also creates another 3 processes, ad-infinitum.
You'll need to put a guard around the multiprocess creation so that workers don't spawn indefinitely:
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