homo | open source natural interaction system | Natural Language Processing library
kandi X-RAY | homo Summary
kandi X-RAY | homo Summary
An open source natural interaction system based on offline wake-up, natural language understanding and sentiment analysis
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QUESTION
I would like to convert NCBI's Biosample Metadata XML file to CSV, or RDF/XML as a second choice. To do that, I believe I have to learn more about the structure of this file. I can run basic XQueries in BaseX*, like just listing all values, but then I've been using shell tools like
sort|uniq -c
to count them. I have heard about XSLT
transformations and GRDDL
in passing, but I don't think a style sheet is provided for this XML document, and I don't know how to create or discover one.
For example, can I get a count of the number of s for each ? Are there any
with more than one primary
? What are the most common db attributes of the primary Ids?
Here's a query that shows my maximum level of XQuery sophistication at this point:
...ANSWER
Answered 2021-Jun-06 at 17:58similar to my answer for https://www.biostars.org/p/280581/ using my tool xsltstream:
QUESTION
I am new in the R programming so that I search a lot but cannot find exactly what I am looking for.
I have two dataframes like;
dataframe 1:
...ANSWER
Answered 2021-May-24 at 15:40When you want to combine two dataframes then you want to use a join
.
I made some example data because I am not sure I understand your data in the question. I understand that Accession
in df1 is the same as V1
in df2.
QUESTION
I have two functions which take multiple arguments:
...ANSWER
Answered 2021-Apr-23 at 15:59You don't have to define a new, standalone function if something inline is more appealing to you:
QUESTION
I get a JSON String as a result from an API that looks like this:
...ANSWER
Answered 2021-Feb-06 at 20:46It's a bit of a hack, but if you know there will always only be one pageid (or if you'll always want the first one), you can use Object.values:
QUESTION
I have following table in PostgreSQL 11.0
...ANSWER
Answered 2021-Mar-23 at 02:56DISTINCT ON
with an appropriate ORDER BY
should do the trick:
QUESTION
I have two associative arrays, one is called $events and one is called $wikipedia.
I want an efficient way to join "extract" and "thumbnail" from $wikipedia to $events where "name" in $events matches "title" in $wikipedia.
Original $events
ANSWER
Answered 2021-Feb-09 at 20:13There is a more efficient way to this. Your solution will have runtime. Thats not very good if you need to join more than a few items.
The easiest way to improve on your solution is to generate a lookup table from the original data beforehand by creating an associative array which has title/name as it's key. When doing the merge afterwards a lookup will be fast (and does not get slower with more entries).
You only loop twice instead of n*m times. Which would lead to a linear runtime
QUESTION
I am looking for an R solution (or a general logic solution) to convert Drosophila melanogaster gene ids into Homo sapiens gene ids. Using R/BiomaRt is problematic, due to the ever-changing nature of the BiomaRt dataset, and its dependence on an internet connection and server status.
The gene ids are in the FlyBase format, but I also have human-friendly gene symbols, e.g.
...ANSWER
Answered 2021-Jan-22 at 16:08I think you can use the FlyBase orthologs table, which is periodically updated and also has DIOPT scores for each ortholog: ftp://ftp.flybase.net/releases/current/precomputed_files/orthologs/dmel_human_orthologs_disease_fb_2020_06.tsv.gz
QUESTION
I have this json dict:
...ANSWER
Answered 2021-Jan-18 at 13:31You can use the following. It will print the desired output, no matter the position of the dict inside the list.
QUESTION
The second code part below is written in the Markdown section, while the first part of the code generating the objects that R calls. For the example, I'll set
...ANSWER
Answered 2021-Jan-17 at 18:54Remove the space at the end here:
QUESTION
I wish to retrieve a single value from this database I have created. For example, The user will select a Name from a drop down box (these names correspond to the name column in the database). The name chosen will be stored in a variable called name_value. I would like to know how to search the database for the name in name_value AND return ONLY the other text in the next column called Scientific, into another variable called new_name. I hope I explained that well?
...ANSWER
Answered 2021-Jan-09 at 09:22The SELECT
statement in SQL can be used to query for rows with specific values, and to specify the columns to be returned.
In your case, the code would look something like this
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