antibody | The fastest shell plugin manager | Command Line Interface library

by getantibody Go Version: v6.1.1 License: MIT

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kandi X-RAY | antibody Summary

antibody is a Go library typically used in Utilities, Command Line Interface applications. antibody has no bugs, it has no vulnerabilities, it has a Permissive License and it has medium support. You can download it from GitHub.

The fastest shell plugin manager. Antibody is a shell plugin manager made from the ground up thinking about performance.

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antibody has a medium active ecosystem.

It has 1689 star(s) with 60 fork(s). There are 17 watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 179 have been closed. On average issues are closed in 51 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of antibody is v6.1.1

Quality

antibody has no bugs reported.

Security

antibody has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

antibody is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

antibody releases are available to install and integrate.

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antibody Key Features

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antibody Examples and Code Snippets

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Community Discussions

Trending Discussions on antibody

R: Split multiple rows into a list element based on pattern

Error Bars on Bar Plot are Incorrectly Shaped

Adding sample size to box plot

Web Scraping does not give the desired results

using purrr::map to rename row names in elements within lists in a bigger list?

Retrieve many nested statements at the same time for a single object with lxml Python

Parsing nested and complex XML in Python

Remove redundant strings without looping

how can i get Json output from Sqlite3

Parsing horizontally aligned text file to DataFrame

QUESTION

R: Split multiple rows into a list element based on pattern

Asked 2021-Jun-02 at 11:06

I'm trying to parse this .txt file in R: https://ftp.expasy.org/databases/cellosaurus/cellosaurus.txt

It's essentially a single column data frame of some ~2 million rows, with each entity being described by multiple rows and bookended by rows containing the string "//".

Ideally, I could capture each entity, made up of multiple rows, as a list element by splitting at "//", but I'm not sure of the most efficient way to go about this.

Any help is much appreciated.

EDIT:

Here's a snippet of what I'm working with:

...

ANSWER

Answered 2021-Jun-02 at 11:06

Here is one solution using data.table.

Source https://stackoverflow.com/questions/67793779

QUESTION

Error Bars on Bar Plot are Incorrectly Shaped

Asked 2021-May-26 at 15:46

I've generated this plot:

However, my error bars are not positioned correctly (see figure). I tried placing fill = RepElement into ggplot aes, but the problem persists. I'm not sure how to position these error bars correctly on my graph. Does anyone know what I'm doing wrong?

...

ANSWER

Answered 2021-May-26 at 15:46

The below does what you want. I used pivot_longer (newer version of gather) to gather the correct SD and Mean together. In the plot, I added color = Sample to the ggplot() call, which makes sure the position="dodge" dodges the different errorbars.

Source https://stackoverflow.com/questions/67689203

QUESTION

Adding sample size to box plot

Asked 2021-Mar-22 at 18:39

We measured antibody levels in different age groups, and our sample size for each group was different.

I would like to add the sample size of the respective group at the top of my box plot (i.e. sample size in toddler boys). The photo attached shows one of my bar graphs.

my code to create the bar graph:

...

ANSWER

Answered 2021-Mar-22 at 18:39

For adding text to graph box, use the documented text() option. Here is a reproducible example. Other than using the Graph Editor, I don't have any recipe for working out text position other than fiddling towards what looks good enough.

Source https://stackoverflow.com/questions/66751367

QUESTION

Web Scraping does not give the desired results

Asked 2021-Jan-30 at 19:22

I am trying to scrape some data from a website and the HTML code would look like as follows.

...

ANSWER

Answered 2021-Jan-07 at 12:05

There are different approaches to get the names.

#1 - Get all names joined as a string as you expected output:

Source https://stackoverflow.com/questions/65608272

QUESTION

using purrr::map to rename row names in elements within lists in a bigger list?

Asked 2020-Dec-01 at 14:25

{library(Seurat)
library(tidyverse)
library(purrr)}



dirNames <- unique(dirname(list.files("data/scRNA_CITE",
                          full.names = T,
                          recursive = T)))


######


#reading multiple directories and a resultant list
dat <- purrr::map(dirNames, Read10X)
names(dat) <- dirNames

#reading just one file
#M06 <- Read10X(data.dir = "data/m06/filtered_feature_bc_matrix/")

#renaming the rows of a list element (here named antibody capture) within one list works! 
rownames(x = M06[["Antibody Capture"]]) <- gsub(pattern = "*_TotalSeqC", replacement = "", 
                                                x = rownames(x = M06[["Antibody Capture"]]))

#creating function for purrr
change_rname <- function(x){
  rownames(x[["Antibody Capture"]]) <- sub(pattern = "*_TotalSeqC", replacement = "", x[["Antibody Capture"]])
}

  
 # using the same function to rename multiple elements within multiple lists of a bigger list works temporarily BUT DOES not get saved within the bigger list
purrr::map(dat,
           ~change_rname(.x))

...

ANSWER

Answered 2020-Dec-01 at 14:25

Return the changed dataframe from the function.

Source https://stackoverflow.com/questions/65091524

QUESTION

Retrieve many nested statements at the same time for a single object with lxml Python

Asked 2020-Oct-30 at 16:12

I am working with big xml where I am retrieving many different properties, and now I am trying to retrieve comment category property and connect it to the text between the tags. However, there are 3 different situations that I need to handle. XML example:

...

ANSWER

Answered 2020-Oct-30 at 16:12

Here is a slightly alternative approach:

Source https://stackoverflow.com/questions/64606363

QUESTION

Parsing nested and complex XML in Python

Asked 2020-Oct-11 at 04:42

I am trying to parse quite complex xml file and store its content in dataframe. I tried xml.etree.ElementTree and I managed to retrieve some elements but I somehow retrieved it multiple times as if there were more objects. I am trying to extract the following: category, created, last_updated, accession type, name type identifier, name type synonym as a list

...

ANSWER

Answered 2020-Oct-10 at 19:44

Your question is a little unclear given the fact that in some cases you are looking to parse tag attributes and in others you are looking to parse tag_values.

My understanding is as follows. You want the following values:

Value of the attribute category of the tag cell-line.
Value of the attribute created of the tag cell-line.
Value of the attribute last_updated of the tag cell-line.
Value of the attribute type of the tag accession.
The text corresponding to the tag name with the attribute identifier.
The text corresponding to the tag name with the attribute synonym.

These values may be extracted from the xml file using the module xml.etree.Etree. In particular, look to using the findall and iter methods of the Element class.

Assuming that the xml is in a file called input.xml, the following snippet should do the trick.

Source https://stackoverflow.com/questions/64296527

QUESTION

Remove redundant strings without looping

Asked 2020-Oct-09 at 14:33

Is there a way to remove both duplicates and redundant substrings from a list, using shell tools? By "redundant", I mean a string that is contained within another string, so "foo" is redundant with "foobar" and "barfoo". For example, take this list:

...

ANSWER

Answered 2020-Oct-08 at 17:56

$ awk '{print length($0), $0}' file |
    sort -k1,1rn -k2 -u |
    awk '!index(str,$2){str = str FS $2; print $2}'
abcd
abd

Source https://stackoverflow.com/questions/64267675

QUESTION

how can i get Json output from Sqlite3

Asked 2020-Oct-08 at 12:34

Hello i wrote a SQL for getting information from 2 tables but when i want to return the data i don't know the index to do it at the right moment. what should i do and is there anyway to get Json response from the first instead of each method?

my function:

...

ANSWER

Answered 2020-Oct-08 at 12:34

Ok after searching a lot found the answer. Actually if you don't set types for the first callback function, you can get a second callback function for when it is completed. Here is my result:

Source https://stackoverflow.com/questions/64197565

QUESTION

Parsing horizontally aligned text file to DataFrame

Asked 2020-Oct-07 at 11:51

I am working with data in txt file which are aligned horizontally, and I would like to align it into columns for example in a DataFrame.

Capitalized code on the beginning of each line (ID, AC etc) should be column names. There are more codes then in the provided example, and when an object does not have information for a particular code it should be empty.

Each object is separated by //. List of all codes:['ID', 'AC', 'AS', 'SY', 'DR', 'RX', 'WW', 'CC', 'ST', 'DI', 'OX', 'HI', 'OI', 'SX', 'AG', 'CA', 'DT']

The problem is that some codes occur several times, like CC or OX. I tried to put it into dataframe and transpose it but to be honest I am stuck with how to match the columns to appropriate elements in the text file and what to do when an entity does not have information for a particular code.

...

ANSWER

Answered 2020-Oct-07 at 11:51

Is this what you're looking for?

I've done this without pandas, but the output, based on the file sample from the question, resembles the one you expect.

Source https://stackoverflow.com/questions/64240693

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