fhir-server | A fast , open source , HL7 FHIR server | Data Manipulation library
kandi X-RAY | fhir-server Summary
kandi X-RAY | fhir-server Summary
A fast, open source, HL7 FHIR server
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QUESTION
I'm trying to import a Bundle of Patient resources to a FHIR server using cURL. Here's my command and the response:
...ANSWER
Answered 2020-Dec-02 at 20:17According the standard, when you post the bundle to [base]/Bundle, you are asking the server to store the batch / transaction like any other Bundle. when you post it to [base] then it will be processed
QUESTION
Using the export api, i am able to export the data out to the container inside storage account.
...ANSWER
Answered 2020-May-06 at 17:59As indicated in the spec (https://hl7.org/fhir/uv/bulkdata/export/index.html#bulk-data-status-request) you should store the Content-Location
return header of the $export
request. That is the location where you can check status of the export and see the URLs of the resulting files.
QUESTION
https://github.com/smart-on-fhir/bulk-import/blob/master/import.md
I used above link for reference and tried to run import using the following code
...ANSWER
Answered 2020-Apr-29 at 16:39$import
is a draft spec and it is not supported (yet) on the Azure API for FHIR.
QUESTION
I have hourly information for the patients heart rate like this
...ANSWER
Answered 2020-Apr-28 at 16:11For a single observation type and a single subject, if the observations are being made on a regular periodic basis, you can use the SampledData data type as the Observation.value. Typically that's for things like EKGs, fetal heart rate monitors, etc. which are sampling on a frequent basis, but nothing stops you from having a sampling period of an hour. However, if you don't have regular sampling, you must capture each as a distinct Observation. The reason is that we need to be able to extract the data however the user chooses to query it. The data needs to come in with the same sort of fine-grained organization that it might later need to go out. You might look at the Bulk Data API which uses LD-JSON to allow more efficient processing of large volumes of data.
QUESTION
I have configured Azure API for FHIR server and i am able to push some data into it. Using post man i am able to query the server and read the json files.
Now, i would like to move on to the next step. Moving the data into datalake and then apply some machine learning model on it.
First of all - Accessing the FHIR data in Microsoft Azure Storage explorer using the managed version - As per this comment, the data cannot be viewed in Cosmos DB when managed version is used.
Now, i am really confused on where the FHIR-server data is stored. I have submitted few patient information and i am not really sure whether its stored in DB or not.
I have couple of other questions in mind. To get the data out of FHIR server, should i first export it to cosmos Db and then setup a data factory to copy the data into datalake or is there any way, i can directly create a pipeline kind of stuff where data gets into datalake from fhir-serve itself.
Can someone guide on this ?
...ANSWER
Answered 2020-Apr-23 at 02:47This question seems to have considerable overlap with your other question. You would use $export
to export the data from the FHIR API to some other form of storage, e.g. BLOB storage and then orchestrate whatever pipeline makes sense from there.
Behind the managed FHIR API there is a database, of course, but there is no direct access to that data store in the managed service. If you want to look at the database schema, I would suggest having a look at the open source version of the service (https://github.com/Microsoft/fhir-server). However, I would recommend against taking any specific dependency on the schema as it may change.
QUESTION
I have setup Azure API for FHIR and a storage account. I successfully integrated the Storage account with FHIR by following this tutorial - https://docs.microsoft.com/en-us/azure/healthcare-apis/configure-export-data
Followed by the integration process, i issues the following rest command
...ANSWER
Answered 2020-Apr-23 at 02:44When you issue the $export request, the response should have a Content-Location
header with a URL to the status document for the export job. If you check that location should should see a status of what has been exported and a location of the files.
QUESTION
I have deployed and configured Azure API for FHIR using this link - https://docs.microsoft.com/en-gb/azure/healthcare-apis/tutorial-web-app-fhir-server
Using postman i am able to successfully insert a patient information into fhir-server.
To automate it I am using python and client service flow.
...ANSWER
Answered 2020-Apr-20 at 16:56It looks like you have not added the (correct) object id of the registered application. Importantly, the application registration has an object id, but so does the service principal. It is the application id for the service principal you are looking for.
Check instructions here:
https://docs.microsoft.com/en-us/azure/healthcare-apis/find-identity-object-ids
You can find it the service principal object id with PowerShell:
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