gnrd | GNRD is a web-application

by GlobalNamesArchitecture HTML Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | gnrd Summary

gnrd is a HTML library. gnrd has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

[Continuous Integration Status][ci_img]][ci] [Coverage Status][coverage_img]][coverage] [CodePolice][qc_img]][qc] [Dependency Status][gems_img]][gems]. GNRD is a [web-application][gnrd]. It finds scientific names in texts, PDF files, images, web-pages, MS Word and MS Excel documents. [RESTful API][api] allows to search for scientific names using scripts.

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Quality

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Support

gnrd has a low active ecosystem.

It has 15 star(s) with 0 fork(s). There are 9 watchers for this library.

It had no major release in the last 6 months.

There are 22 open issues and 17 have been closed. On average issues are closed in 99 days. There are 5 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of gnrd is current.

Quality

gnrd has 0 bugs and 0 code smells.

Security

gnrd has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

gnrd code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

gnrd is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

gnrd releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

It has 3830 lines of code, 130 functions and 50 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

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gnrd Key Features

No Key Features are available at this moment for gnrd.

gnrd Examples and Code Snippets

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Community Discussions

Trending Discussions on gnrd

plotting number range in a correlation matrix with colorbar with rectangular tiles [matshow (matplotlib)]

How to merge multiple JSON files in Python

QUESTION

plotting number range in a correlation matrix with colorbar with rectangular tiles [matshow (matplotlib)]

Asked 2018-May-11 at 12:41

I am trying to plot a correlation matrix with values shows in plot. Instead of a single value of correlation coefficient, I want a range on the tiles (confidence interval). To achieve this I am first plotting the matrix with a colorbar using matshow and individual writing values of low and high intervals on the plot using centering option. Here is the snippet of that code.

...

ANSWER

Answered 2018-May-11 at 12:41

I came up with an answer for my query. I changed my aspect='auto' and tiles became retangular for the other issue colorbar issue, I decided to simply use the average of these number for the plotting :

Source https://stackoverflow.com/questions/50291005

QUESTION

How to merge multiple JSON files in Python

Asked 2017-Oct-05 at 15:38

I have had to create multple JSON files for reasons of processing a corpus (using GNRD http://gnrd.globalnames.org/ for scientific name extraction). I now want to use these JSON files to annotate said corpus as a whole.

I am trying to merge the multiple JSON files in Python. The contents of each JSON files are arrays of just scientific_name (key) and the name found (value). Below is an example of one of the shorter files:

...

ANSWER

Answered 2017-Oct-05 at 15:38

If I understand correctly, you want to get all "scientificNames" values in the "names" elements of a batch of files. If I'm wrong, you should give an expected output to make things easier to understand.

I'd do something like that:

Source https://stackoverflow.com/questions/46583967

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install gnrd

There are quite a few moving parts in the system — Tesseract for OCR, Libre Office to read various file formats, Postgresql for data, Redis for asyncronous execution of commands, gnfinder for name-finding etc. We recommend to install Docker and Docker Compose to dramatically simplify the installation process. You can follow .travis.yml file to see necessary components for the system on a Debian-based GNU/Linux distribution. You can see docker-compose file to get an insight on how to make a complete Docker-based installation.
This install is not safe, and is given to test installation by new users. You need to create real passwords and change settings in .env file accordingly, also you need to remove POSTGRES_HOST_AUTH_METHOD=trust environment variable from .env file. Here we will assume installation is done by a user john with a group john. Add user john to docker group in /etc/group and relog. This will give the user privileges to operate docker. Get source code and swich to production branch. Optionally pull gnames/gnrd from dockerhub to save time on the gnrd docker image building step. Run docker compose from the project’s root directory. Now you should have a working version of GNRD on http://0.0.0.0:9292 and the following command should work as expected. The response should include a URL that will contain the found names. You can change the placement of default directories, and ports by modifying. After you made it working login to PostgreSQL, set an account and password and change .env file accordingly. Remove the POSTGRES_HOST_AUTH_METHOD=trust environment variable from .env file.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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