fhir | Official source for the HL7 FHIR Specification

 by   HL7 HTML Version: v5.0.0 License: Non-SPDX

kandi X-RAY | fhir Summary

kandi X-RAY | fhir Summary

fhir is a HTML library. fhir has no bugs, it has no vulnerabilities and it has low support. However fhir has a Non-SPDX License. You can download it from GitHub.

This library builds and publishes the FHIR specification, based on the contained spreadsheet data in the project. | CI Status (master) | CI Status (R4B) | | :---: | :---: | | | |.
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              fhir has a low active ecosystem.
              It has 421 star(s) with 158 fork(s). There are 63 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              fhir has no issues reported. There are 11 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of fhir is v5.0.0

            kandi-Quality Quality

              fhir has no bugs reported.

            kandi-Security Security

              fhir has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              fhir has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              fhir releases are not available. You will need to build from source code and install.

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            fhir Key Features

            No Key Features are available at this moment for fhir.

            fhir Examples and Code Snippets

            No Code Snippets are available at this moment for fhir.

            Community Discussions

            QUESTION

            Parse string to enum with custom attribute
            Asked 2022-Apr-04 at 09:16

            I have an enum as follows. I also have a string in-progress I am trying to parse this string to the appropriate enum. As seen by the following test we want to parse to take a string and return the enum

            ...

            ANSWER

            Answered 2022-Apr-04 at 08:43

            You can try with a extension method to read the Custom Atribute from Enums:

            Source https://stackoverflow.com/questions/71734138

            QUESTION

            Reverse chaining in FHIR
            Asked 2022-Mar-28 at 16:40

            I want to do a search in HAPI FHIR server as follows:

            • Retrive Observation resources that are referenced in .has-member of other Observation resources that have a specific .device id.

            Example:

            ...

            ANSWER

            Answered 2022-Mar-28 at 16:40

            Using reverse chaining (_has):

            Observation?_has:Observation:has-member:device=Device/2412

            That is, get Observation resources where another Observation with device=Device/2412 refers to this resource through has-member.

            This uses the definition of _has http://hl7.org/fhir/search.html#has and the search parameters on Observation http://hl7.org/fhir/observation.html#search

            Source https://stackoverflow.com/questions/71647385

            QUESTION

            FHIR search for duplicate patients
            Asked 2022-Mar-26 at 19:42

            We use FHIR, but we've had a few customer accidentally create a new Patient instead of finding and adding data to an existing patient creating duplicate entries for the same real-life patient.

            I'd like to search for patients with same DOB and similar names and then offer them UI in the app to merge their records.

            My questions are:

            1. What's the most efficient way to do this search in FHIR without having to retrieve and compare every Patient resource?
            2. What's the cleanest way to transfer related patient resources to one of the patients as part of a merge?

            Thanks in advance.

            ...

            ANSWER

            Answered 2022-Mar-26 at 19:42

            Your solution here is ultimately going to depend upon the FHIR server and/or EHR that you are connecting to.

            In terms of being able to search for patients with similar demographics, in an ideal world, you would make a patient search API call with the demographics and the FHIR server would return not only patients with matching demographics but also patients with a similar set of demographics. (E.g., returning John Smith with DOB 4/3/1921 in addition to Johnathan Smith with DOB 4/3/1921). Epic does this and uses a point-based system to essentially assign a weight to a potential patient match.

            In terms of merging, doing this over FHIR would require the server to support something like a $merge operation. I personally am not aware of any major EHRs that support this. Usually merges are handled via HL7 ADT interface messages (there are a few message types, like A18 and A34, that would fit the bill and again, it'll depend on the server's capabilities).

            Source https://stackoverflow.com/questions/71623352

            QUESTION

            Using Python Requests to POST data to REST API
            Asked 2022-Mar-25 at 21:46

            I have been working with the FHIR REST API for a while but haven't had any experience with Python. As my first python project I am attempting to create a simple python script that can read and write to an open API. I am able to read but I am stuck on creating a successful POST due to the following: error [TypeError("unhashable type: 'dict'")]. I don't fully understand how the python dictionary works and attempted to use a tuple but get the same error.

            ...

            ANSWER

            Answered 2022-Mar-25 at 21:46

            It looks like the Appointment POST endpoint accepts a simple payload like:

            Source https://stackoverflow.com/questions/71622210

            QUESTION

            spring cloud gateway only forwards to base path of url
            Asked 2022-Mar-20 at 18:59

            I'm trying to build a simple api-gateway using spring-cloud-gateway. So far I understood the basic principle but I'm running in a specific Problem:

            The target url which I'm forwarding my request potentially contains zero, one or multiple path segments. Unfortunately, these path segments are ignored.

            ...

            ANSWER

            Answered 2022-Mar-20 at 18:59

            Ok, I found the answer: According to here it is intentional, that the path of the uri is ignored. So in my case, the set path filter would fix the problem:

            Source https://stackoverflow.com/questions/71545944

            QUESTION

            What resources are (typically|supposed |required) to be in a /Patient/[ID]/$everything FHIR resource?
            Asked 2022-Mar-15 at 08:21

            The short version is this: The /Patient/[ID]/$everything for the example patient shown below has a reference to a procedure that is not also included in the /Patient/$everything resource.

            Specifically: This example is from synthea. Synthea is an amazing tool that provides synthetic patients in FHIR format. (https://synthea.mitre.org/)

            I have this example patient: https://syntheticmass.mitre.org/v1/fhir/Patient/5acc8bb4-2d14-4461-a560-228d96459cc3

            This exists in the $everything resource as part of a claim resource:

            ...

            ANSWER

            Answered 2022-Mar-14 at 23:08

            Why is the Procedure resource not in the /Patient/$everything?

            That's an error that should be reported against Synthea

            Are there other synthea data sets that might be helpful to us (I’m pretty sure I’ve heard of a covid one that’s out there somewhere).

            I don't know; google might be your friend

            Source https://stackoverflow.com/questions/71469225

            QUESTION

            How to keep Firely.Terminal from trashing the FHIR package cache?
            Asked 2022-Mar-14 at 15:11

            One of the brilliant aspects of Firely.Terminal is its ability to interoperate with the local FHIR package cache (~/.fhir) in a way that is fully compatible with HAPI tools using the cache. Sadly, that no longer seems to be the case.

            Today I updated Firely.Terminal to version 2.4.2 and it seems that the new version walks all over the FHIR package cache, changing files without having been asked to.

            It used to be that the only thing Firely.Terminal changed in existing packages was the generation of a missing .index.json. For newly installed packages, the only difference to a HAPI-installed package was some additional fields in .index.json (presence of some fields containing null which would normally be suppressed, and the addition of a fhirVersion field).

            When the new Firely.Terminal is told to add a package to a scope (fhir install) it automatically 'bakes' it, which seems to involve things like snapshotting all StructureDefinition resources and expanding all ValueSet resources. Even resources whose content remains unscathed get their timestamps trashed. The same fate befalls all packages that are listed as dependencies in the manifest of the package being added to the scope.

            There is an 'unbake' command (e.g. fhir unbake --package kbv.ita.for@1.0.1) but this does not operate recursively. What's more, when it says 'Bake successfully removed from KBV.ITA.FOR@1.0.1' (note the erroneous capitalisation) then that is an outright lie - the contents of the package directory are completely unchanged, except for the removal of the file .bake.json.

            Hence the only way of restoring the package cache to working order is to identify all trashed packages, delete them all, and then reference them with some HAPI tool in order to get them re-cached.

            I wouldn't mind so much if Firely.Terminal trashed its own cache. But what it destroys is the global HAPI package cache for the current user, and that is simply not acceptable.

            Is there any way of suppressing the destructive behaviour of Firely.Terminal? Ideally globally (with machine-wide effect), but a secret command switch would do in a pinch. If that is not possible: does anyone know which of the older versions is the newest that still works, and where to get it?

            Note: if the cached packages are write-protected then Firely.Terminal doesn't take the hint - it tries to clobber the files anyway and spews out oodles of 'access denied' messages. What's more, it doesn't even stop when an error occurs; instead it continues on its merry way and trashes everything that one might have forgotten to write-protect.

            Background: one of the properties of the FHIR package cache that is important for our work is that the files in the cache are exactly the same as those in the (normative) published packages. In particular, we need profiles published without snapshots to not contain snapshots, value sets published without expansions to not contain expansions and so on. For one thing, this makes it possible to verify that the cached files are exactly the same as those contained in the published packages (or fixed versions thereof). For another, we need to control the context in which profiles are snapshotted, value sets expanded and so on because it may be necessary to supply dependencies that are different from those declared in the package manifest. The latter is sometimes necessary because the profile/package version management in the context of electronic prescriptions in Germany is a bit, erm, peculiar and can diverge from FHIR standards. For this to work at all the resources must be snapshotted/expanded dynamically (depending on the use context), not statically on disk. Things are moving in a more standards-compliant direction but we are not quite there yet.

            ...

            ANSWER

            Answered 2022-Mar-14 at 14:45

            Latest version without bake (on install)

            From some quick testing of the latest versions of Firely Terminal, it seems 2.2.0 is the latest without bake functionality (and auto-bake on install). Installation instructions:

            Source https://stackoverflow.com/questions/71449452

            QUESTION

            Python loop through ndjson file data
            Asked 2022-Feb-22 at 12:04

            I have ndjson file Patients.ndjson

            ...

            ANSWER

            Answered 2022-Feb-22 at 12:04

            See the section about variables for jinja2, you only need a small change:

            main.py

            Source https://stackoverflow.com/questions/71220081

            QUESTION

            FHIR publisher fails on a java NullPointerException
            Asked 2022-Feb-17 at 21:10

            I am trying to build our IG for the first time using the publishler.jar but am getting a NullPointerException. I understand that there is some problem with it not managing to find some code in a CodeSystem but I can't figure it out. One clear problem that you'll see when I paste the output is that, for some reason it is working with r5 but we need r4 (4.0.1) and I have a hunch that this is leading to the problem because in r5 we do seem to have some issue with CodeSystems we still haven't figured out. Maybe someone can figure out what I'm doing wrong.

            I actually tried 2 different approaches. the first:

            java -jar publisher.jar -ig "c:\FHIR\outburn\fsh-generated\resources\ImplementationGuide-outburn.json" output:

            ...

            ANSWER

            Answered 2022-Feb-17 at 21:10

            that’s a bug in the IG publisher for sure. Will be fixed next release. but the cause is because you have a URL for the property that is simply a URL. That might be valid and what you want, or not.

            Explanation:

            The property definition has a uri that formally identifies the property. The IGPublisher was expecting that to be in the format {code-system-uri}#{code} but that format isn't required.

            Source https://stackoverflow.com/questions/71149947

            QUESTION

            MongoDB - Querying inner object that is an array
            Asked 2022-Feb-07 at 19:04

            I am new to MongoDB queries and looking for some guidance on how to retrieve documents that fit the search criteria. In particular, I need to find all the id(s) of the documents where the code is JPID i.e, "code": "JPID". We can assume the name of the collection is systems.

            Since this is a nested object I thought of using the $unwid - but I am still stuck on how to do it. The example is very trivial. Any help and guidance is appreciated.

            ...

            ANSWER

            Answered 2022-Feb-07 at 19:04
            1. You can find all documents that contain at least one element in type.coding array by simple match the code element with the value JPID:

            Source https://stackoverflow.com/questions/71022805

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            Install fhir

            You can download it from GitHub.

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