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QUESTION
I'm trying to know which observations are active during specific episodes of time
My real objective is to know which Diagnosis (dx) are active during a Pregnancy period (9 months) by a patient. It has to be considered that a patient can have different number of pregnancies along her life and also a different number of diagnosis (the dx can or can't be active ).
I have tried foverlaps like here or here but weren't exactly what I was looking for. The real problem is this and it's well documented but not for R.
Here they make it work for SQL I think. So I hope it's solvable...
I also tried Non-Equi Joins like this but I'm not able to make it work the way I want...
Let's get into it:
I have one DB with patient (id) Diagnosis (dx), the time it was registered (InD_dx) and the time it ended (EndD_dx) like this:
...ANSWER
Answered 2021-Mar-31 at 15:51type = 'within'
is excluding some partial overlaps you're looking for.
Try:
QUESTION
I completed the suggested go-tour, watched some tutorials and gopher-conferences on YouTube. And that's pretty much it.
I have a project which requires me to send get requests and store the results in files. But amount of URL's is around 80 million.
I'm testing with 1000 URLs only.
Problem: I think I couldn't managed to make it concurrent, although I've followed some guidelines. I don't know what's wrong. But maybe I'm wrong and it's concurrent, just did not seem fast to me, the speed felt like sequential requests.
Here is the code I've written:
...ANSWER
Answered 2020-Nov-01 at 17:22When setting up a concurrent pipeline, a good guideline to follow is to always first set up and instantiate the listeners that will execute concurrently (in your case, crawlers), and then start feeding them data through the pipeline (in your case, the urlChannel
).
In your example, the only thing preventing a deadlock is the fact that you've instantiated a buffered channel with the same number of rows that your test file has (1000 rows). What the code does is it puts URLs inside the urlChannel
. Since there are 1000 rows inside your file, the urlChannel
can take all of them without blocking. If you put more URLs inside the file, the execution will block after filling up the urlChannel
.
Here is the version of the code that should work:
QUESTION
I'm writing a manuscript using Rmarkdown with RStudio and knitr
. To format the references, I'm using the .csl
file for the journal Global Ecology and Biogeography, which I got from https://www.zotero.org/styles.
My problem is that the titles are automatically transformed to sentence case. This is especially problematic for species names, which become lower case.
For example,
...ANSWER
Answered 2020-Jun-04 at 03:39It looks like knitr
uses pandoc-citeproc
for citation rendering, and that you can preserve casing by using another set of brackets around the title. See https://github.com/jgm/pandoc-citeproc/issues/269.
So instead of
QUESTION
I want to use rvest
to scrape a page which has titles and run times of talks at a recent conference and then combine the values into a tibble
ANSWER
Answered 2017-Aug-27 at 04:23The simplest way is to select a node that encloses both of the nodes you want for each row, then iterate over them, pulling out both of the nodes you want at once. purrr::map_df
is handy for not only iterating, but even combining the results into a nice tibble:
QUESTION
I had a look at this Question: Inputting NA where there are missing values when scraping with rvest with a great answer!
Goal: Achieve the same result with xpath.
It seems in the example css identifiers are used:
...ANSWER
Answered 2019-Sep-19 at 13:32Your xpath should be header/h3/a
, not /header/h3/a
. The leading slash would imply you want to start at the root of the tree again, not the current node.
QUESTION
I have been trying to scrape a table for mapping analysis of facilities around the country. However, I can't seem to manage to
I have tried the code below as there and realize there is no html table available on this website.
...ANSWER
Answered 2019-Jul-11 at 23:39I am new to R but something like the following where you define a function to retrieve the row info as a dataframe from a given url. Loop over how ever many pages you want calling the function and merging returned dfs into one big df. As nodeLists are not always the same length e.g. not every listing has a telephone number, you need to test for whether element is present in a loop over the rows. I use the method in the answer by alistaire (+ to him)
I am using css selectors rather than xpath. You can read about them here.
Given the # of possible pages I would look into using an http session. You get the efficiency of re-using a connection. I use them in other languages; from a quick google it seems R provides this, for example, with html_session.
I would welcome suggestions for improvement and any edits for correcting indentation. I'm learning as I go.
QUESTION
I am developing a Shiny app with plenty of plots. Whenever I change some input, plots are not shown for a very short time before they are plotted and instead a rather prominent error message in red is shown. How this looks can be seen here.
There are certainly solutions to solve this problem, see for example here. Also, Joe Cheng from RStudio spends the last ten minutes of his talk at the Shiny Developer Conference on a solution with the function req()
(see here). However, the latter didn't quite solve the issue on first try and the former requires more work because I have to add if clauses to every plot.
For now, I think I could actually live with the error message because the plot is shown fairly quickly thereafter. However, is there any chance to change the color. If this would be grey and dark blue, it would be much more unobtrusive.
...ANSWER
Answered 2019-Jun-25 at 11:36If you inspect the element you see that the class of the error is shiny-output-error
, so you change the color with css, see below:
Css code would read:
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