unfun | 19 paper `` Reverse-Engineering Satire

import pandas as pd

configfile: "config.yaml"
sample_file = config["sample_file"]

sampleID = pd.read_table(sample_file)['sampleID']
fastq = pd.read_table(sample_file)['fastq']
df = pd.read_table(sample_file)


rule all:
    input:
       expand("fastqs/{sample}", sample=[config['samples'][x] for x in config['samples']])

rule move_and_rename_fastqs:
    input: fastq = lambda w: df[df.sampleID == w.sample].fastq.tolist()
    output: "fastqs/{sample}"
    shell:
    """echo mv {input.fastq} {output}"""