toullig | since January 17 2017 ) a reader , parser of Fast5 files

by GenomicParisCentre Java Version: Current License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | toullig Summary

toullig is a Java library. toullig has no bugs, it has no vulnerabilities, it has build file available and it has low support. However toullig has a Non-SPDX License. You can download it from GitHub.

toullig

Support

Quality

Security

License

Reuse

Support

toullig has a low active ecosystem.

It has 1 star(s) with 0 fork(s). There are 11 watchers for this library.

It had no major release in the last 6 months.

toullig has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of toullig is current.

Quality

toullig has 0 bugs and 0 code smells.

Security

toullig has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

toullig code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

toullig has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

toullig releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 5672 lines of code, 234 functions and 29 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed toullig and discovered the below as its top functions. This is intended to give you an instant insight into toullig implemented functionality, and help decide if they suit your requirements.

This method finds out the list of outliers and creates the optimal sequences
Returns the position of the side window out of the right window
Returns the index of the side window in the left side of the binary sequence
Returns the sum of the CIGARs of the CIGAR
Main entry point
Read the ID of a SAM file
Calculate stats for cutadaptor
Main execution of cutadaptTrimming
Main program entry point
Read a GFD file
Gets the fast5 file
Perform the actual action
Trim the sequence after trimming the sequence
Reverse the sequence
Gets all log files
Stack the workflow status
Get the serial number of the barcode in the given fast5 file
The default input ports
Read the basecaller
Obtain the Metric Version of the Metadata
Takes in a fasta file and creates a sequence file
Trim the cutadapt method
Gets the number of the read from the file
Read the chemical kit version
Configure the module
Read the version of the variable

Get all kandi verified functions for this library.

toullig Key Features

No Key Features are available at this moment for toullig.

toullig Examples and Code Snippets

No Code Snippets are available at this moment for toullig.

Community Discussions

No Community Discussions are available at this moment for toullig.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install toullig

You can download it from GitHub.
You can use toullig like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the toullig component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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