VIGOR4 | Vigor4 uses 'Maven ' to build & amp ; package the program

by JCVenterInstitute Java Version: 3545356 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | VIGOR4 Summary

VIGOR4 is a Java library. VIGOR4 has no bugs, it has no vulnerabilities, it has build file available and it has low support. However VIGOR4 has a Non-SPDX License. You can download it from GitHub.

Vigor4 uses 'Maven' to build & package the program. VIGOR4 runs on Linux environment JAVA8 or above Exonerate2.2.0 Vigor Viral database (Available at VIGOR_DB). Refer to INSTALL.md for detailed instructions.

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Quality

Security

License

Reuse

Support

VIGOR4 has a low active ecosystem.

It has 12 star(s) with 10 fork(s). There are 19 watchers for this library.

It had no major release in the last 12 months.

There are 3 open issues and 4 have been closed. On average issues are closed in 414 days. There are 7 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of VIGOR4 is 3545356

Quality

VIGOR4 has 0 bugs and 0 code smells.

Security

VIGOR4 has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

VIGOR4 code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

VIGOR4 has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

VIGOR4 releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 8430 lines of code, 356 functions and 96 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed VIGOR4 and discovered the below as its top functions. This is intended to give you an instant insight into VIGOR4 implemented functionality, and help decide if they suit your requirements.

Writes the gene models in VVM
Checks whether the list of Exonions in the list of Exons are identical
Converts a gene name to its locator
Converts gene coordinates into human readable string
Searches for all peptides in a peptide database
Returns the best matches in the given stream
Adjusts the edges of the adjacent protein sequence
Closes a buffered writer
Closes all opened files
Convert gene models into VFF3 format
Converts a value to a bounded integer
Converts a value to a bounded double
Clone this exon
Return the next trie from the iterator
Creates an instance of the given set of strings
Write model to VN file
Parses a string into an RNA edit setting
Retrieves the alignment of the victim database
Parse the splice_form string
Process the sequence of nucleotide sequences in the given sequence
Output blast hit
This method writes gene models to outfile
Set the reference protein protein ID associated with the protein file
Entry point for the Vigor service
Writes the VIRTome model to the output
Writes the gene models to VDM file

Get all kandi verified functions for this library.

VIGOR4 Key Features

No Key Features are available at this moment for VIGOR4.

VIGOR4 Examples and Code Snippets

No Code Snippets are available at this moment for VIGOR4.

Community Discussions

No Community Discussions are available at this moment for VIGOR4.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install VIGOR4

You can download it from GitHub.
You can use VIGOR4 like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the VIGOR4 component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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