bunsen | Explore , transform , and analyze FHIR data with Apache Spark

 by   cerner Java Version: Current License: Apache-2.0

kandi X-RAY | bunsen Summary

kandi X-RAY | bunsen Summary

bunsen is a Java library typically used in Big Data, Spark applications. bunsen has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub, Maven.

Bunsen lets users load, transform, and analyze FHIR data with Apache Spark. It offers Java and Python APIs to convert FHIR resources into Spark Datasets, which then can be explored with the full power of that platform, including with Spark SQL. For details see the Bunsen documentation. Bunsen is built and tested with Apache Maven, with the standard Maven lifecycle to build, install, and deploy it. User documentation is built with Sphinx. PySpark should be installed in the environment to generate the Python documentation. With that in place, the user can simply run make html in the docs directory to build the documentation, and make deploy in that directory to publish it to the GitHub pages site. Bunsen is hosted in the Maven Central repository. Bunsen's Java code should follow the Google Java Style Guide. Please use GitHub issues to record any requests or issues for this project.

            kandi-support Support

              bunsen has a low active ecosystem.
              It has 94 star(s) with 37 fork(s). There are 22 watchers for this library.
              It had no major release in the last 6 months.
              There are 19 open issues and 39 have been closed. On average issues are closed in 33 days. There are 6 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of bunsen is current.

            kandi-Quality Quality

              bunsen has 0 bugs and 0 code smells.

            kandi-Security Security

              bunsen has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              bunsen code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              bunsen is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              bunsen releases are not available. You will need to build from source code and install.
              Deployable package is available in Maven.
              Build file is available. You can build the component from source.
              bunsen saves you 13784 person hours of effort in developing the same functionality from scratch.
              It has 27643 lines of code, 946 functions and 133 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed bunsen and discovered the below as its top functions. This is intended to give you an instant insight into bunsen implemented functionality, and help decide if they suit your requirements.
            • Runs the program
            • Convert a resource definition to an avro converter
            • Generates a list of Avro schemas
            • Extract contained urls from resource string
            • Broadcast a set of concept maps to the system
            • Returns a list of concept maps to be loaded
            • Broadcast a map of concept maps to the concept map
            • Returns a list of concept maps to be loaded
            • Visit a parent extension
            • Creates a fully qualified namespace for a given StructureDefinitionUrl
            • Load schema definitions
            • Visit a contained element
            • Pops an in -_val set from the user
            • Returns a Hapi converter for the given element definitions
            • Returns a concept map
            • Returns the value set
            • Creates an object from the HAPI
            • Visit a composite type
            • Visit a composite
            • Create a composite object based on the input data
            • Convert an HBase object to a structure object
            • Converts a given element to a JSON type
            • Visit a reference
            • Converts a parent extension to its super type
            • Converts a field name to a schema type
            • Add values to the Dataset
            • Add mappings to a ConceptMap
            Get all kandi verified functions for this library.

            bunsen Key Features

            No Key Features are available at this moment for bunsen.

            bunsen Examples and Code Snippets

            No Code Snippets are available at this moment for bunsen.

            Community Discussions


            What are the dependencies that will allow Cerner Bunsen to load FHIR R4 (ukcore)?
            Asked 2020-Aug-31 at 23:38

            Does anyone know if the Cerner Bunsen library (https://github.com/cerner/bunsen) will load FHIR R4 bundles and persist the data to spark sql databases? If anyone can offer any guidance or point me to any, that would be great. At the moment I'm just trying to load a bundled sample from https://simplifier.net/ukcore. The ultimate objective is to persist incoming Bundles to a hive database to be accessed by Apache Spark clusters.

            The sample code to try to load a single entry Bundle is:



            Answered 2020-Aug-31 at 23:38

            At present R4 version is not supported due to major changes made in 0.5.X release and its in our roadmap but we do not have an ETA yet.

            If you are trying to explore sample data, please test with 0.4.6 release which supports both STU3 and R4. Please note the older releases are not maintained any more.

            Thanks, Amaresh

            Source https://stackoverflow.com/questions/63652256


            Localhost throws forbidden error and some directories are just blank
            Asked 2019-Aug-22 at 07:30

            I installed lamp stack using the bundle that came with the distro; bunsen-meta-lamp.

            After lamp installation apparmor was installed and activated it. Root directory has been changed to /var/www/. var/www/ and it's sub directories have %USER:$USER read and write access (even tried 755). a2enmod module is enabled. After every mod, Apache service is restarted.

            The result: Localhost does list the project folders. However, some projects open up in the browser; while others throw a forbidden error. The browser displays sub directories as a blank page.

            Tried methods mentioned on here, here and here with no result.

            Here are my 3 .conf files.



            Answered 2019-Aug-22 at 07:30

            Solved the problem with:

            Source https://stackoverflow.com/questions/57320873


            Getting data out of JSON in NodeJS results in undefined
            Asked 2018-Feb-20 at 10:30

            So today I was writing a nodejs app to get data out of a website's API.So the API returns data in JSON. This is my code :



            Answered 2018-Feb-20 at 10:30

            The 'res' is in string format so instead of JSON.stringify() use JSON.parse() so that it will be converted back into Javascript object, then try consoling the result as shown below and try to access meta_data after that.

            Source https://stackoverflow.com/questions/48882749

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install bunsen

            You can download it from GitHub, Maven.
            You can use bunsen like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the bunsen component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            gh repo clone cerner/bunsen

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