disq | manipulating bioinformatics sequencing formats in Apache

by disq-bio Java Version: 0.3.8 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | disq Summary

disq is a Java library typically used in Healthcare, Pharma, Life Sciences, Big Data, Kafka, Spark, Hadoop applications. disq has no bugs, it has no vulnerabilities, it has build file available and it has low support. However disq has a Non-SPDX License. You can download it from GitHub, Maven.

A library for manipulating bioinformatics sequencing formats in Apache Spark.

Support

Quality

Security

License

Reuse

Support

disq has a low active ecosystem.

It has 27 star(s) with 11 fork(s). There are 12 watchers for this library.

It had no major release in the last 12 months.

There are 17 open issues and 54 have been closed. On average issues are closed in 199 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of disq is 0.3.8

Quality

disq has no bugs reported.

Security

disq has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

disq has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

disq releases are available to install and integrate.

Deployable package is available in Maven.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed disq and discovered the below as its top functions. This is intended to give you an instant insight into disq implemented functionality, and help decide if they suit your requirements.

Get path chunks
Load path splits for a file
Searches for an index
Get container offsets from the ram file
Read a sequence of bytes from the channel
Fetches a buffer at the given position
Make sure that the given block index is available
Gets a parallel RDD for a given path
Converts an interval into an Htsjdk QueryInterval
Save the reads into a file
Gets a read from a file
Closes this channel
Reads an existing BAM file
Creates a thread factory
Create a BZF input stream from the given input stream
Save a SAMRecord to a file
Return a record writer
Get a record writer
Overrides the filtering of splits
Writes the variants to a file
Saves the reads
Save VCF header to a file
Gets the path chunks
Saves the reads into a CAM file
Writes the reads to a file
Get the first read of the part of the bgzf file

Get all kandi verified functions for this library.

disq Key Features

No Key Features are available at this moment for disq.

disq Examples and Code Snippets

No Code Snippets are available at this moment for disq.

Community Discussions

Trending Discussions on disq

What is dollar sign within directory location?

QUESTION

What is dollar sign within directory location?

Asked 2017-May-21 at 13:30

I got a Stata do file which always uses "dollar" sign $ whenever "using" something.

But when I actually run it on my computer, it looks like my computer thinks the directory is ignored.

Here, the directory "logs" was just ignored and obviously my computer thinks I am looking for the file in the main directory "C"

What is that dollar sign? Why does my computer think so?

...

ANSWER

Answered 2017-May-21 at 13:30

Dollar signs are here used to refer to Stata macros.

Stata sees here a reference to a global macro. $global would be a reference to a global macro that has the name global. If a macro is not defined, that is not in itself illegal, and Stata substitutes an empty string. log's default, it seems, in this case is to write in the root directory.

Here the consequence is not what you want, as evidently you don't have a C: drive or (perhaps more likely) don't have permission to write in it. (There is no precise information in your post about your set-up, although it can be guessed that you are using Windows.)

You can define a global such as

Source https://stackoverflow.com/questions/44092578

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install disq

You can download it from GitHub, Maven.
You can use disq like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the disq component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

This table summarizes the current level of support for each feature across the different file formats. See discussion below for details on each feature.

Find more information at: