hapi-fhir | HAPI FHIR - Java API for HL7 FHIR Clients and Servers | Data Manipulation library
kandi X-RAY | hapi-fhir Summary
kandi X-RAY | hapi-fhir Summary
HAPI FHIR - Java API for HL7 FHIR Clients and Servers. [License] Complete project documentation is available here: A demonstration of this project is available here: This project is Open Source, licensed under the Apache Software License 2.0. Please see [this wiki page] for information on where to get help with HAPI FHIR. Please see [Smile CDR] for information on commercial support.
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QUESTION
I am trying to build our IG for the first time using the publishler.jar but am getting a NullPointerException. I understand that there is some problem with it not managing to find some code in a CodeSystem but I can't figure it out.
One clear problem that you'll see when I paste the output is that, for some reason it is working with r5 but we need r4 (4.0.1) and I have a hunch that this is leading to the problem because in r5 we do seem to have some issue with CodeSystems we still haven't figured out. Maybe someone can figure out what I'm doing wrong.
I actually tried 2 different approaches. the first:
java -jar publisher.jar -ig "c:\FHIR\outburn\fsh-generated\resources\ImplementationGuide-outburn.json"
output:
ANSWER
Answered 2022-Feb-17 at 21:10that’s a bug in the IG publisher for sure. Will be fixed next release. but the cause is because you have a URL for the property that is simply a URL. That might be valid and what you want, or not.
Explanation:
The property definition has a uri that formally identifies the property. The IGPublisher was expecting that to be in the format {code-system-uri}#{code} but that format isn't required.
QUESTION
Github Actions workflow for a private repository:
Within IntelliJ project OrionDAO is a facet of project Orion and so has to be run first.
Part of OrionDAO Pom follows:
...ANSWER
Answered 2021-Aug-03 at 07:34In the end I created a release workflow and then it created the packages. It seems that packages are only created on a release event type although I couldn't find this mentioned in all the documentation I read.
QUESTION
I'd like to color output text.
I mean, I'm getting logs:
...ANSWER
Answered 2021-May-27 at 14:16In terminals text can be colored using ANSI codes. You just have to insert them before and after [...]:
QUESTION
I am currently working on a Hapi-FHIR project.
There I want to implement a collection of Questionnar Responses by Patient. The collection gives back all QuestionnaireResponses of a Patient with a given PatientId.
This works without problems but I also want to adhere to the REST Resource Naming Conventions.
So the search URL for my Collection shoud look something like
https://example.com/patient/{id}/questionnaireresponses.
Right now my search URL looks like this:
https://example.com/QuestionnaireResponse?patient={id}
I already tried to set my own search Url with @Path("/patient/{id}/questionnaireresponses") but HAPI-FHIR seems to ignore this.
I searched the HAPI-FHIR documentation already but I did not find anything related.
My question is where does the naming of the search urls happen in HAPI-FHIR and how can I change the name of a search url?
...ANSWER
Answered 2021-Mar-05 at 15:03While I also find the FHIR naming and syntax choices a bit annoying, they're an integral part of the FHIR specification, not specific to Hapi. If you change them, your server won't be usable by a client that is expecting the standardized FHIR API. Which kind of defeats the point of using FHIR, no?
It might well be trivial to change the resource name in a Hapi server request (Patient to patient or patients), but since it doesn't really make that much sense, it might not be. So technically you might be forced to prehandle requests to support even that part of your syntax.
For the kind of hierarchical interrogation that you want, (patient/{id}/questionnaireresponses), things are more complicated even pure semantically, because there might be more than one relationship between two resource types. Even for your example, would patient/{id}/questionnaireresponses return just the responses where the patient is the subject, or also those where he is only the author? And how would you retrieve just those he has authored? FHIR is designed to be as explicit as possible to avoid different interpretations that can lead to wrong information being sent.
QUESTION
i'm working on a Java project that works correctly in Eclipse. When i use another IDE, or when i try to compile it using maven, i have some compilation errors, all related to a specific import. In pom, i have:
...ANSWER
Answered 2021-Feb-05 at 08:51Solved! It was a trivial maven repository problem. For some reasons, this was a bug caused by a maven repository cache error. I deleted the repository folder (.m2/repository) and downloaded again dependencies... Very strange because the files were the same.
QUESTION
How do I add the below to an R4 Patient?
...ANSWER
Answered 2020-Nov-25 at 02:24That extension isn't allowed on Patient. It's defined with a context of Bundle.entry.search. It's not a characteristic of the patient themselves, it's a characteristic of a particular entry in a search result based on a specific set of search criteria. The same Patient instance might well be a good result on one search and a poor result on a different search. So to add the extension, you'd have to add it on a 'search' object, not patient.
QUESTION
I am working on a jetty service, and when starting it, I get a lot of:
SomeClass scanned from multiple locations: jar: jar1!Someclass.class, jar2!Someclass.class
So a single class is provided by two jars, and which I get on runtime is undefined, which is not good. Looking at other issues I found that tattletale can help diagnosing the problem. The report, in the Multiple Jar files section lists the same classes as jetty upon startup and which jars they were in. A subset of the conflicts are:
And looking at
...ANSWER
Answered 2020-Oct-09 at 11:47Sounds like a bug in jscience with how they packaged their jar, might want to file an issue with them.
They should either ...
- have a proper/focused jar and dependencies.
- or a standalone uber jar with no dependencies.
Not mixing the two concepts.
Meanwhile, just use the / to exclude specific transitive dependencies that are causing you duplicate classes.
Also, you might want to run any of the various duplicate class/resource checker maven plugins to find any other cases you might have present on your project.
QUESTION
ANSWER
Answered 2020-Sep-08 at 15:54QUESTION
I'm looking for help on how to post a bundle containing multiple resources to a HAPI Server. I'm running the [test server][1], and I've tried using both the Jetty server and running it as a docker container. I'm able to successfully start the server, go to the UI and post a patient directly. And I can also post a patient directly from within Postman:
...ANSWER
Answered 2020-Jul-13 at 22:01To execute a transaction or a batch, POST it to the server's 'root' endpoint, not the Bundle endpoint - so .../hapi-fhir-jpaserver/fhir, not .../hapi-fhir-jpaserver/fhir/Bundle
QUESTION
In the FHIR REST API, there are some standard parameters for all resources that can be used in the 'search' endpoints.
I need to use the '_profile' parameter on a search operation: https://www.hl7.org/fhir/search.html#profile
The HAPI FHIR documentation on implementing search operations (https://hapifhir.io/hapi-fhir/docs/server_plain/rest_operations_search.html) has a lot of examples, none mention the parameters that apply to all the resources, like '_profile'.
I also checked their test server online (http://hapi.fhir.org/resource?serverId=home_r4&pretty=true&resource=Observation) and I can't find a way to specify the '_profile' there, to see how it works.
At the code level, what I'm trying to do is this:
...ANSWER
Answered 2020-Jun-24 at 22:42The way to make the search work with the "_profile" parameters is this:
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Install hapi-fhir
You can use hapi-fhir like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the hapi-fhir component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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